RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 BICD1Q96G01 975 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 TCHPQ9BT92 498 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 CUEDC2Q9H467 287 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 BMPR1AP36894 532 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 RAB27AP51159 221 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 KMT5BQ4FZB7 885 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 NOMO2Q5JPE7 1267 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 SPOUT1Q5T280 376 aaKnown RBP14.78□□□□□ -0.04
LINC00540-202ENST00000616974 NELFCDQ8IXH7 590 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 SMYD4Q8IYR2 804 aaPredicted RBP14.78□□□□□ -0.04
LINC00540-202ENST00000616974 ABI1Q8IZP0 508 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 CNNM3Q8NE01 707 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 FBXO22Q8NEZ5 403 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 VN1R3Q9BXE9 311 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 PRDM6Q9NQX0 595 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 OLFML3Q9NRN5 406 aa14.78□□□□□ -0.04
LINC00540-202ENST00000616974 N4BP3O15049 544 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 SOX4Q06945 474 aaPredicted RBP14.77□□□□□ -0.04
LINC00540-202ENST00000616974 DPYDQ12882 1025 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 STRN3Q13033 797 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 PCBP1Q15365 356 aaKnown RBP eCLIP14.77□□□□□ -0.04
LINC00540-202ENST00000616974 NAB2Q15742 525 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 MPZL3Q6UWV2 235 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 UNC13DQ70J99 1090 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 COLGALT1Q8NBJ5 622 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 CBWD1Q9BRT8 395 aa14.77□□□□□ -0.04
LINC00540-202ENST00000616974 TOM1L1O75674 476 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 CXCL8P10145 99 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 GTF2F1P35269 517 aaKnown RBP eCLIP14.77□□□□□ -0.05
LINC00540-202ENST00000616974 SLC11A1P49279 550 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 NCBP1Q09161 790 aaKnown RBP14.77□□□□□ -0.05
LINC00540-202ENST00000616974 NOLC1Q14978 699 aaKnown RBP eCLIP14.77□□□□□ -0.05
LINC00540-202ENST00000616974 CNNM4Q6P4Q7 775 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 GLB1LQ6UWU2 654 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 EPM2AIP1Q7L775 607 aaPredicted RBP14.77□□□□□ -0.05
LINC00540-202ENST00000616974 LRRC43Q8N309 656 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 SCFD1Q8WVM8 642 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 MAPK8IP1Q9UQF2 711 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 MTCH2Q9Y6C9 303 aa14.77□□□□□ -0.05
LINC00540-202ENST00000616974 TMEM265A0A087WTH1 108 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 ACOT2P49753 483 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 LIG4P49917 911 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 FAM160A1Q05DH4 1040 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 GPM6BQ13491 265 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 FAM26FQ5R3K3 315 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 ISM2Q6H9L7 571 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 KCNT2Q6UVM3 1135 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 TMEM87AQ8NBN3 555 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 HASPINQ8TF76 798 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 SAAL1Q96ER3 474 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 CCDC51Q96ER9 411 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 ST6GALNAC4Q9H4F1 302 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 PCIF1Q9H4Z3 704 aa14.76□□□□□ -0.05
LINC00540-202ENST00000616974 PRG3Q9Y2Y8 225 aaPredicted RBP14.76□□□□□ -0.05
LINC00540-202ENST00000616974 GOLGA8IPA6NC78 632 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 GOLGA6L4A6NEF3 574 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 CASTOR2A6NHX0 329 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 GOLGA8JA6NMD2 632 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 CLDN3O15551 220 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 FOSL2P15408 326 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 GAP43P17677 238 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 MATR3P43243 847 aaKnown RBP eCLIP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 GUCY2FP51841 1108 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 BCAR1P56945 870 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 RBM10P98175 930 aaKnown RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 MCL1Q07820 350 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 SLC10A6Q3KNW5 377 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 CRELD2Q6UXH1 353 aaPredicted RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 CCDC65Q8IXS2 484 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 AUTS2Q8WXX7 1259 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 C18orf25Q96B23 403 aaPredicted RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 B3GALT6Q96L58 329 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 ADPGKQ9BRR6 497 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 TCF20Q9UGU0 1960 aaKnown RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 H3BNC9 293 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 GTPBP6O43824 516 aaPredicted RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 PIGRP01833 764 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 GALTP07902 379 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 ERVFC1P60507 584 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 RNASELQ05823 741 aaKnown RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 L1TD1Q5T7N2 865 aaKnown RBP14.75□□□□□ -0.05
LINC00540-202ENST00000616974 ZPBP2Q6X784 338 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 ADGRD2Q7Z7M1 963 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 COLGALT2Q8IYK4 626 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 SPPL3Q8TCT6 385 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 PGBD4Q96DM1 585 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 MARCH5Q9NX47 278 aa14.75□□□□□ -0.05
LINC00540-202ENST00000616974 A0A0B4J269 797 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 C5orf67F2Z3F1 127 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 CLIC2O15247 247 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 TGFB1I1O43294 461 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 FGF18O76093 207 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 RPN1P04843 607 aaKnown RBP14.74□□□□□ -0.05
LINC00540-202ENST00000616974 DSC1Q08554 894 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 POSTNQ15063 836 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 ENOX2Q16206 610 aaKnown RBP14.74□□□□□ -0.05
LINC00540-202ENST00000616974 DCAF4L1Q3SXM0 396 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 ALKAL1Q6UXT8 129 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 TAS1R1Q7RTX1 841 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 C3orf58Q8NDZ4 430 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms