RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 HAUS8Q9BT25 410 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 BFARQ9NZS9 450 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 LCMT1Q9UIC8 334 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 A0A1W2PQJ5 194 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 ARHGEF37A1IGU5 675 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 EIF4E1BA6NMX2 242 aaKnown RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 MGEA5O60502 916 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 AGTP01019 485 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 PDHA1P08559 390 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 ZNF772Q68DY9 489 aaPredicted RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 ANKMY2Q8IV38 441 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 FAM161BQ96MY7 647 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 MAP3K14Q99558 947 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 MRPL46Q9H2W6 279 aaKnown RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 ECT2Q9H8V3 914 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 JPH1Q9HDC5 661 aaPredicted RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 LMTK2Q8IWU2 1503 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 DGAT1O75907 488 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 LMNAP02545 664 aaKnown RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 HMGCS2P54868 508 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 BIRC2Q13490 618 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 ITPK1Q13572 414 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 FBXW10Q5XX13 1052 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 PARP9Q8IXQ6 854 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 DHX38Q92620 1227 aaKnown RBP14.85□□□□□ -0.03
CPSF1-212ENST00000616140 LACRTQ9GZZ8 138 aa14.85□□□□□ -0.03
CPSF1-212ENST00000616140 CHN1P15882 459 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 XPAP23025 273 aaPredicted RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 FXR2P51116 673 aaKnown RBP eCLIP14.84□□□□□ -0.039e-7■■■■□ 19.6
CPSF1-212ENST00000616140 ROR1Q01973 937 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 BAATQ14032 418 aaPredicted RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 LONRF1Q17RB8 773 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 LCA5Q86VQ0 697 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 JAMLQ86YT9 394 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 USP38Q8NB14 1042 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 HNRNPLLQ8WVV9 542 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 PRMT1Q99873 361 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 TRABDQ9H4I3 376 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 CACYBPQ9HB71 228 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 DBR1Q9UK59 544 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 STAP1Q9ULZ2 295 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 NEXMIFQ5QGS0 1516 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 CEP152O94986 1710 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 PHF2O75151 1096 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 FDX1P10109 184 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 COPS2P61201 443 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 C1orf228Q6PIY5 440 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 SPATA21Q7Z572 469 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 DDX56Q9NY93 547 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 CHORDC1Q9UHD1 332 aaPredicted RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 CFAP73A6NFT4 308 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 COMTP21964 271 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 CIITAP33076 1130 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 SLC1A1P43005 524 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 ERFP50548 548 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 KLHDC7AQ5VTJ3 777 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 TRMT10CQ7L0Y3 403 aaKnown RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 GRAMD1AQ96CP6 724 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 FUT8Q9BYC5 575 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 TMEM117Q9H0C3 514 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 RPAP3Q9H6T3 665 aaPredicted RBP14.84□□□□□ -0.03
CPSF1-212ENST00000616140 CYP4F11Q9HBI6 524 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 PITPNM2Q9BZ72 1349 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 KPNA7A9QM74 516 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 TYK2P29597 1187 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 MMGT1Q8N4V1 131 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 TMEM143Q96AN5 459 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 C18orf8Q96DM3 657 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 DRC3Q9H069 523 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 UBN1Q9NPG3 1134 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 SENP1Q9P0U3 644 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 PNMA3Q9UL41 463 aa14.84□□□□□ -0.03
CPSF1-212ENST00000616140 SPDYE2BA6NHP3 402 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 SPDYE6P0CI01 402 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 KLRK1P26718 216 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 PHEXP78562 749 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 MTM1Q13496 603 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 KYNUQ16719 465 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 FSCBQ5H9T9 825 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 SYCP2LQ5T4T6 812 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 STRIP1Q5VSL9 837 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 BEST2Q8NFU1 509 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 CRAMP1Q96RY5 1269 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 ANLNQ9NQW6 1124 aa14.83□□□□□ -0.03
CPSF1-212ENST00000616140 BNIP3LO60238 219 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 PLA2G4AP47712 749 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 STAT5BP51692 787 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 EIF3EP60228 445 aaKnown RBP14.83□□□□□ -0.04
CPSF1-212ENST00000616140 TRIML2Q8N7C3 387 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 CCDC124Q96CT7 223 aaKnown RBP14.83□□□□□ -0.04
CPSF1-212ENST00000616140 BEGAINQ9BUH8 593 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 SUDS3Q9H7L9 328 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-212ENST00000616140 CAPN6Q9Y6Q1 641 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 AFF2P51816 1311 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 A8MXQ7 604 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 ZBTB22O15209 634 aa14.83□□□□□ -0.04
CPSF1-212ENST00000616140 ATMINO43313 823 aaPredicted RBP14.83□□□□□ -0.04
CPSF1-212ENST00000616140 SLC37A4O43826 429 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms