RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 POLR2DO15514 142 aaKnown RBP12.69□□□□□ -0.38
LINC00539-204ENST00000608957 CLASP2O75122 1294 aaKnown RBP12.69□□□□□ -0.38
LINC00539-204ENST00000608957 HIP1RO75146 1068 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 ZP2Q05996 745 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 COASYQ13057 564 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 TMEM119Q4V9L6 283 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 LLGL2Q6P1M3 1020 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 LRSAM1Q6UWE0 723 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 TMEM184AQ6ZMB5 413 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 KRBA2Q6ZNG9 492 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 DDX53Q86TM3 631 aaKnown RBP12.69□□□□□ -0.38
LINC00539-204ENST00000608957 ZBTB8OSQ8IWT0 167 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 VPS52Q8N1B4 723 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 MRPL43Q8N983 215 aaKnown RBP12.69□□□□□ -0.38
LINC00539-204ENST00000608957 DEPTORQ8TB45 409 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 FEZF2Q8TBJ5 459 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 TMEM169Q96HH4 297 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 PRIMPOLQ96LW4 560 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 CDCA3Q99618 268 aaPredicted RBP12.69□□□□□ -0.38
LINC00539-204ENST00000608957 TMEM175Q9BSA9 504 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 CCSER1Q9C0I3 900 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 C2orf40Q9H1Z8 148 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 NGRNQ9NPE2 291 aaKnown RBP12.69□□□□□ -0.38
LINC00539-204ENST00000608957 KLK14Q9P0G3 267 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 CACNG4Q9UBN1 327 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 USP25Q9UHP3 1055 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 DNM3Q9UQ16 869 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 GIT1Q9Y2X7 761 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 STK24Q9Y6E0 443 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 ANK1P16157 1881 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 A0A087X0B3 334 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 ACKR2O00590 384 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 N4BP3O15049 544 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 ACTN4O43707 911 aaKnown RBP12.68□□□□□ -0.38
LINC00539-204ENST00000608957 CXCL14O95715 111 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 EFEMP2O95967 443 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 CTSAP10619 480 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 UBA7P41226 1012 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 NPTX2P47972 431 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 SLC12A3P55017 1021 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 NCBP1Q09161 790 aaKnown RBP12.68□□□□□ -0.38
LINC00539-204ENST00000608957 SMC1AQ14683 1233 aaKnown RBP12.68□□□□□ -0.38
LINC00539-204ENST00000608957 ZRSR1Q15695 479 aaKnown RBP12.68□□□□□ -0.38
LINC00539-204ENST00000608957 MAPK6Q16659 721 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 SYCE2Q6PIF2 218 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 TAS1R1Q7RTX1 841 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 CABP7Q86V35 215 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 RNF168Q8IYW5 571 aaPredicted RBP12.68□□□□□ -0.38
LINC00539-204ENST00000608957 GJD3Q8N144 294 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 PDILTQ8N807 584 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 KIFAP3Q92845 792 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 DHX58Q96C10 678 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 TRIM6Q9C030 488 aaPredicted RBP12.68□□□□□ -0.38
LINC00539-204ENST00000608957 S1PR5Q9H228 398 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 UBN1Q9NPG3 1134 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 BLOC1S4Q9NUP1 217 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 SNTG2Q9NY99 539 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 KANSL3Q9P2N6 904 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 CCDC39Q9UFE4 941 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 CDH22Q9UJ99 828 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 FAN1Q9Y2M0 1017 aa12.68□□□□□ -0.38
LINC00539-204ENST00000608957 NPHP3-ACAD11A0A0J9YXS1 232 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 SFI1A8K8P3 1242 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PTGESO14684 152 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 LILRB3O75022 631 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 GUCY2CP25092 1073 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PEX3P56589 373 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 RAD51AP2Q09MP3 1159 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PRPF4BQ13523 1007 aaKnown RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 KARSQ15046 597 aaKnown RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PPP2R5AQ15172 486 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PTPN14Q15678 1187 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ARSHQ5FYA8 562 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ANKRD54Q6NXT1 300 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ADHFE1Q8IWW8 467 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ELOA2Q8IYF1 753 aaPredicted RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 SYT2Q8N9I0 419 aaPredicted RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 RASSF8Q8NHQ8 419 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 SUSD6Q92537 303 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 RABGGTAQ92696 567 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 CCDC34Q96HJ3 373 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 IFT74Q96LB3 600 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 FUCA2Q9BTY2 467 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 APOL5Q9BWW9 433 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 TSPY26PQ9H489 355 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ARHGAP28Q9P2N2 729 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PARP2Q9UGN5 583 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 SERTAD1Q9UHV2 236 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 HOOK1Q9UJC3 728 aaKnown RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 PRG3Q9Y2Y8 225 aaPredicted RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 USP15Q9Y4E8 981 aaPredicted RBP12.67□□□□□ -0.38
LINC00539-204ENST00000608957 HCFC2Q9Y5Z7 792 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 IRAK3Q9Y616 596 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ZMYM2Q9UBW7 1377 aa12.67□□□□□ -0.38
LINC00539-204ENST00000608957 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.66□□□□□ -0.38
LINC00539-204ENST00000608957 ABLIM1O14639 778 aa12.66□□□□□ -0.38
LINC00539-204ENST00000608957 RECQL4O94761 1208 aa12.66□□□□□ -0.38
LINC00539-204ENST00000608957 ALDH2P05091 517 aa12.66□□□□□ -0.38
LINC00539-204ENST00000608957 PLA2G4BP0C869 781 aa12.66□□□□□ -0.38
LINC00539-204ENST00000608957 STAT6P42226 847 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms