RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 OTOP3Q7RTS5 596 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 HSCBQ8IWL3 235 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 FEZF2Q8TBJ5 459 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 KIFAP3Q92845 792 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 SNX21Q969T3 373 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 B3GALT6Q96L58 329 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 GPR62Q9BZJ7 368 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 CCDC113Q9H0I3 377 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 RXFP1Q9HBX9 757 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.66■□□□□ 0.9
PNKP-213ENST00000599543 CHST7Q9NS84 486 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 LIMD1Q9UGP4 676 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 KIAA1024Q9UPX6 916 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 STK24Q9Y6E0 443 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 TRIP11Q15643 1979 aa20.66■□□□□ 0.9
PNKP-213ENST00000599543 SF3B1O75533 1304 aaKnown RBP eCLIP20.65■□□□□ 0.9
PNKP-213ENST00000599543 TTLL13PA6NNM8 815 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 ACKR2O00590 384 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 TADA2AO75478 443 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 PTPN5P54829 565 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 CREMQ03060 361 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 PTGDRQ13258 359 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 TUSC3Q13454 348 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 HSP90AA2PQ14568 343 aaPredicted RBP20.65■□□□□ 0.9
PNKP-213ENST00000599543 ECM1Q16610 540 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 C4orf32Q8N8J7 132 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 PRSS33Q8NF86 280 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 CMASQ8NFW8 434 aaPredicted RBP20.65■□□□□ 0.9
PNKP-213ENST00000599543 SNX29Q8TEQ0 813 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 RABGGTAQ92696 567 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 KIFC3Q9BVG8 833 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 DDX19AQ9NUU7 478 aaKnown RBP20.65■□□□□ 0.9
PNKP-213ENST00000599543 SNTG2Q9NY99 539 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 KIF3AQ9Y496 699 aa20.65■□□□□ 0.9
PNKP-213ENST00000599543 H3BQV1 296 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 RECQL4O94761 1208 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 MRE11P49959 708 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 EFNA5P52803 228 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 VCPP55072 806 aaKnown RBP20.64■□□□□ 0.89
PNKP-213ENST00000599543 PDIA5Q14554 519 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 LARP1BQ659C4 914 aaKnown RBP20.64■□□□□ 0.89
PNKP-213ENST00000599543 RIN2Q8WYP3 895 aaPredicted RBP20.64■□□□□ 0.89
PNKP-213ENST00000599543 CACNG4Q9UBN1 327 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 PCDHB6Q9Y5E3 794 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 USP34Q70CQ2 3546 aa20.64■□□□□ 0.89
PNKP-213ENST00000599543 MYH11P35749 1972 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 MYO15AQ9UKN7 3530 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 CCDC195A0A1B0GUA6 201 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 CASTOR2A6NHX0 329 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 LAD1O00515 517 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 PDGFBP01127 241 aaPredicted RBP20.63■□□□□ 0.89
PNKP-213ENST00000599543 THP07101 528 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 MYBP10242 640 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 DCAF4L1Q3SXM0 396 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 CYP26C1Q6V0L0 522 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 PALB2Q86YC2 1186 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 GLYCTKQ8IVS8 523 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 GPR65Q8IYL9 337 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 IGSF22Q8N9C0 903 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 HASPINQ8TF76 798 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 PAAF1Q9BRP4 392 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 SMOC2Q9H3U7 446 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 USP20Q9Y2K6 914 aa20.63■□□□□ 0.89
PNKP-213ENST00000599543 DOCK8Q8NF50 2099 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 PTGESO14684 152 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 EDN1P05305 212 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 SPATA31D3P0C874 917 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 AVPR2P30518 371 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 TOB1P50616 345 aaPredicted RBP20.62■□□□□ 0.89
PNKP-213ENST00000599543 KRT79Q5XKE5 535 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 SPATA31D4Q6ZUB0 917 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 APBB1IPQ7Z5R6 666 aaPredicted RBP20.62■□□□□ 0.89
PNKP-213ENST00000599543 HDAC7Q8WUI4 952 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 STAMQ92783 540 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 PLEKHA4Q9H4M7 779 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 POLD4Q9HCU8 107 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 FNIP2Q9P278 1114 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 DAXXQ9UER7 740 aaPredicted RBP20.62■□□□□ 0.89
PNKP-213ENST00000599543 GDAQ9Y2T3 454 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 VWA8A3KMH1 1905 aa20.62■□□□□ 0.89
PNKP-213ENST00000599543 CLUHO75153 1309 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 VPS37CA5D8V6 355 aaPredicted RBP20.61■□□□□ 0.89
PNKP-213ENST00000599543 TGM5O43548 720 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 RFPL2O75678 378 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 KIF4AO95239 1232 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 C1RP00736 705 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 ATF7IP2Q5U623 682 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 EEF1DP3Q658K8 133 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 SMG7Q92540 1137 aaKnown RBP20.61■□□□□ 0.89
PNKP-213ENST00000599543 RHOBTB2Q9BYZ6 727 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 WDR6Q9NNW5 1121 aaKnown RBP20.61■□□□□ 0.89
PNKP-213ENST00000599543 DNM3Q9UQ16 869 aa20.61■□□□□ 0.89
PNKP-213ENST00000599543 CITO14578 2027 aa20.6■□□□□ 0.89
PNKP-213ENST00000599543 K7ERI5 159 aa20.6■□□□□ 0.89
PNKP-213ENST00000599543 RPL17P18621 184 aaKnown RBP20.6■□□□□ 0.89
PNKP-213ENST00000599543 GBP2P32456 591 aaPredicted RBP20.6■□□□□ 0.89
PNKP-213ENST00000599543 PRPHP41219 470 aa20.6■□□□□ 0.89
PNKP-213ENST00000599543 TCF15Q12870 199 aa20.6■□□□□ 0.89
PNKP-213ENST00000599543 DMP1Q13316 513 aaPredicted RBP20.6■□□□□ 0.89
PNKP-213ENST00000599543 RTP2Q5QGT7 225 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms