RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 MYBP10242 640 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 GLRA2P23416 452 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 SPATA31D4Q6ZUB0 917 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 ERMP1Q7Z2K6 904 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 CCDC83Q8IWF9 413 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 RIN2Q8WYP3 895 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-212ENST00000597995 TTC12Q9H892 705 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-212ENST00000597995 BRMS1Q9HCU9 246 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 GVINP1Q7Z2Y8 2422 aa13.87□□□□□ -0.19
TRIM28-212ENST00000597995 B4GALT5O43286 388 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 TADA2AO75478 443 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 NPTXRO95502 500 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 RFX1P22670 979 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 AKAP5P24588 427 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 RBM25P49756 843 aaKnown RBP13.86□□□□□ -0.19
TRIM28-212ENST00000597995 CALCRLQ16602 461 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 PPP4R3CPQ6ZMV5 832 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 DIS3L2Q8IYB7 885 aaKnown RBP13.86□□□□□ -0.19
TRIM28-212ENST00000597995 B3GALT6Q96L58 329 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 PRIMPOLQ96LW4 560 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 CCDC43Q96MW1 224 aaKnown RBP13.86□□□□□ -0.19
TRIM28-212ENST00000597995 TBC1D17Q9HA65 648 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 SLC2A4RGQ9NR83 387 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 DAXXQ9UER7 740 aaPredicted RBP13.86□□□□□ -0.19
TRIM28-212ENST00000597995 PARP2Q9UGN5 583 aa13.86□□□□□ -0.19
TRIM28-212ENST00000597995 SF3B1O75533 1304 aaKnown RBP eCLIP13.86□□□□□ -0.193e-6■■■■■ 65.8
TRIM28-212ENST00000597995 DMDP11532 3685 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 GUCY1B3Q02153 619 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 TUSC3Q13454 348 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 HTR4Q13639 388 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 HSP90AA2PQ14568 343 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-212ENST00000597995 FAM187BQ17R55 369 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 GPR152Q8TDT2 470 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 POLR3FQ9H1D9 316 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-212ENST00000597995 PRMT7Q9NVM4 692 aaPredicted RBP13.85□□□□□ -0.19
TRIM28-212ENST00000597995 KLK14Q9P0G3 267 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 CA14Q9ULX7 337 aa13.85□□□□□ -0.19
TRIM28-212ENST00000597995 NEMFO60524 1076 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 LMNAP02545 664 aaKnown RBP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 HNRNPA1P09651 372 aaKnown RBP eCLIP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 RPL17P18621 184 aaKnown RBP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 FSHRP23945 695 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 HOXA9P31269 272 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 TXKP42681 527 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 ID4P47928 161 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 RTP2Q5QGT7 225 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 PDXDC1Q6P996 788 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 POTEGQ6S5H5 508 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 GET4Q7L5D6 327 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 CDR2LQ86X02 465 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 GLYCTKQ8IVS8 523 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 MCPH1Q8NEM0 835 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 PIGOQ8TEQ8 1089 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 PIK3R5Q8WYR1 880 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 MTMR9Q96QG7 549 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 LLPHQ9BRT6 129 aaKnown RBP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 TTPALQ9BTX7 342 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 FZD8Q9H461 694 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 ARHGEF3Q9NR81 526 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 DLGAP2Q9P1A6 1054 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 FBXW11Q9UKB1 542 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 SIT1Q9Y3P8 196 aa13.84□□□□□ -0.19
TRIM28-212ENST00000597995 EP300Q09472 2414 aaPredicted RBP13.84□□□□□ -0.19
TRIM28-212ENST00000597995 LRRIQ4A6NIV6 560 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 N4BP3O15049 544 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 USO1O60763 962 aaKnown RBP13.83□□□□□ -0.2
TRIM28-212ENST00000597995 STARD6P59095 220 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 ELAVL2Q12926 359 aaKnown RBP13.83□□□□□ -0.2
TRIM28-212ENST00000597995 CDCA2Q69YH5 1023 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-212ENST00000597995 DCLRE1AQ6PJP8 1040 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 PRSS55Q6UWB4 352 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-212ENST00000597995 ZBTB8OSQ8IWT0 167 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 LNX1Q8TBB1 728 aaPredicted RBP13.83□□□□□ -0.2
TRIM28-212ENST00000597995 RABGGTAQ92696 567 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 SHDQ96IW2 340 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 CLSTN3Q9BQT9 956 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 PAAF1Q9BRP4 392 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 C2orf40Q9H1Z8 148 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 TMEM60Q9H2L4 133 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 TUFT1Q9NNX1 390 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 CDH7Q9ULB5 785 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 NUMBLQ9Y6R0 609 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 DCHS1Q96JQ0 3298 aa13.83□□□□□ -0.2
TRIM28-212ENST00000597995 DOCK6Q96HP0 2047 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 CD2BP2O95400 341 aaKnown RBP13.82□□□□□ -0.2
TRIM28-212ENST00000597995 THP07101 528 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 POU2F2P09086 479 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 SPATA31C1P0DKV0 1188 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 PSMD5Q16401 504 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 UVSSAQ2YD98 709 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 PPM1LQ5SGD2 360 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 LIN9Q5TKA1 542 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 FAM171A1Q5VUB5 890 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 ZC3H14Q6PJT7 736 aaKnown RBP13.82□□□□□ -0.2
TRIM28-212ENST00000597995 RTL10Q7L3V2 364 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 GRASPQ7Z6J2 395 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-212ENST00000597995 C1orf210Q8IVY1 113 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 KCNG4Q8TDN1 519 aa13.82□□□□□ -0.2
TRIM28-212ENST00000597995 ZSCAN31Q96LW9 406 aaPredicted RBP13.82□□□□□ -0.2
TRIM28-212ENST00000597995 NACC1Q96RE7 527 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms