RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MLKLQ8NB16 471 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 SCFD1Q8WVM8 642 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 SPIRE2Q8WWL2 714 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 TCP11Q8WWU5 503 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 PPP2R3CQ969Q6 453 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 CCDC47Q96A33 483 aaKnown RBP10.38□□□□□ -0.75
TRIM28-208ENST00000597172 JPH2Q9BR39 696 aaPredicted RBP10.38□□□□□ -0.75
TRIM28-208ENST00000597172 DNAJC25Q9H1X3 360 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 C17orf75Q9HAS0 396 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 LARSQ9P2J5 1176 aaKnown RBP10.38□□□□□ -0.75
TRIM28-208ENST00000597172 SEL1LQ9UBV2 794 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 MAPK8IP1Q9UQF2 711 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 ATG2AQ2TAZ0 1938 aa10.38□□□□□ -0.75
TRIM28-208ENST00000597172 ARID2Q68CP9 1835 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 SMIM35A0A1B0GVV1 85 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 SLC16A4O15374 487 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 PPP1R37O75864 691 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 GNAT1P11488 350 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 ATF7P17544 494 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-208ENST00000597172 CTNNB1P35222 781 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 DNM2P50570 870 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 NCKAP1LP55160 1127 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 KCNA1Q09470 495 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 ZC2HC1CQ53FD0 456 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-208ENST00000597172 NLRC5Q86WI3 1866 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 EFHBQ8N7U6 833 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 TMEM161BQ8NDZ6 487 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 ZNF507Q8TCN5 953 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 C11orf84Q9BUA3 381 aaPredicted RBP10.37□□□□□ -0.75
TRIM28-208ENST00000597172 KIFC3Q9BVG8 833 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 GTPBP4Q9BZE4 634 aaKnown RBP10.37□□□□□ -0.75
TRIM28-208ENST00000597172 TSPY26PQ9H489 355 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 ST6GALNAC4Q9H4F1 302 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 MRPL44Q9H9J2 332 aaKnown RBP10.37□□□□□ -0.75
TRIM28-208ENST00000597172 R4GN57 208 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 LOXHD1Q8IVV2 1947 aa10.37□□□□□ -0.75
TRIM28-208ENST00000597172 ADGRA3Q8IWK6 1321 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 DCDC2BA2VCK2 349 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CCDC169A6NNP5 214 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 ASAP2O43150 1006 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 GPR32O75388 356 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 PRPF6O94906 941 aaKnown RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CSPG5O95196 566 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 VTNP04004 478 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 SRGAP2CP0DJJ0 459 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 TMOD1P28289 359 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 PMS1P54277 932 aaKnown RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 GTF2BQ00403 316 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 DMP1Q13316 513 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 MTMR3Q13615 1198 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CAPSQ13938 189 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 MXD4Q14582 209 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 BMT2Q1RMZ1 405 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CENPPQ6IPU0 288 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 TAS1R3Q7RTX0 852 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 HAUS6Q7Z4H7 955 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 RHPN2Q8IUC4 686 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CCDC105Q8IYK2 499 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 GUF1Q8N442 669 aaKnown RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 DTWD2Q8NBA8 298 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 DNAJB3Q8WWF6 145 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 PSPC1Q8WXF1 523 aaKnown RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 KCNN1Q92952 543 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 WNT8BQ93098 351 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 ZNF668Q96K58 619 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 IFT74Q96LB3 600 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 FAM49AQ9H0Q0 323 aaPredicted RBP10.36□□□□□ -0.75
TRIM28-208ENST00000597172 RBSNQ9H1K0 784 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 IKZF4Q9H2S9 585 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 ADAMTS10Q9H324 1103 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CDHR5Q9HBB8 845 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 IFT122Q9HBG6 1241 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 KMT5AQ9NQR1 393 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 ARHGAP28Q9P2N2 729 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 SORCS3Q9UPU3 1222 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 PCDHB13Q9Y5F0 798 aa10.36□□□□□ -0.75
TRIM28-208ENST00000597172 CACNA1IQ9P0X4 2223 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 C5orf67F2Z3F1 127 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 RBAK-RBAKDNI3L0D1 243 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 EIF3DO15371 548 aaKnown RBP eCLIP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 ZZEF1O43149 2961 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 TGFB1I1O43294 461 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 GCNT3O95395 438 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 CKBP12277 381 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 BMPR1AP36894 532 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 NAMPTP43490 491 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 ZNF165P49910 485 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 GPC3P51654 580 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 SMTNP53814 917 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 NLRP11P59045 1033 aaKnown RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 PTENP60484 403 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 POU5F1BQ06416 359 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 RBL2Q08999 1139 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 IQCB1Q15051 598 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 PPP2R5AQ15172 486 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 CT47A1Q5JQC4 288 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 CDCA2Q69YH5 1023 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 SERINC5Q86VE9 423 aa10.35□□□□□ -0.75
TRIM28-208ENST00000597172 DHX40Q8IX18 779 aaKnown RBP10.35□□□□□ -0.75
TRIM28-208ENST00000597172 NELFCDQ8IXH7 590 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms