RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 KIF4AO95239 1232 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 PLA2G5P39877 138 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 PEX3P56589 373 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 CACNB1Q02641 598 aaPredicted RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 RAD51AP2Q09MP3 1159 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 GNL2Q13823 731 aaKnown RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 TMEM119Q4V9L6 283 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 GLRA4Q5JXX5 417 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 KIAA1841Q6NSI8 718 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 FUT10Q6P4F1 479 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 FAM173BQ6P4H8 233 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 POTEHQ6S545 545 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 PRSS55Q6UWB4 352 aaPredicted RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 RSPO2Q6UXX9 243 aaPredicted RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 USP49Q70CQ1 688 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 GPR149Q86SP6 731 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 C3orf58Q8NDZ4 430 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 CCDC43Q96MW1 224 aaKnown RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 ZMAT2Q96NC0 199 aaKnown RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 FAM193BQ96PV7 902 aaPredicted RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 ACO2Q99798 780 aaKnown RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 TARS2Q9BW92 718 aaKnown RBP11.56□□□□□ -0.56
LIG1-213ENST00000596672 CDT1Q9H211 546 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 GOLGA2P5Q9HBQ8 144 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 UBN1Q9NPG3 1134 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 BLOC1S4Q9NUP1 217 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 ARHGAP28Q9P2N2 729 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 GDAQ9Y2T3 454 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 SPTBN4Q9H254 2564 aa11.56□□□□□ -0.56
LIG1-213ENST00000596672 PTPRZ1P23471 2315 aaPredicted RBP11.55□□□□□ -0.56
LIG1-213ENST00000596672 VWA3AA6NCI4 1184 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 TMEM221A6NGB7 291 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 M0R296 226 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 SLC16A4O15374 487 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 ST18O60284 1047 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 PAPLNO95428 1278 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 BRD1O95696 1058 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 PROZP22891 400 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 KLRC2P26717 231 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 GLUD2P49448 558 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 SLC12A3P55017 1021 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 VCPP55072 806 aaKnown RBP11.55□□□□□ -0.56
LIG1-213ENST00000596672 GRIK3Q13003 919 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 MAPK6Q16659 721 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 PTPN21Q16825 1174 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 SEZ6Q53EL9 994 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 HAUS3Q68CZ6 603 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 ALKAL1Q6UXT8 129 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 DTHD1Q6ZMT9 781 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 PALB2Q86YC2 1186 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 GLYCTKQ8IVS8 523 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 ZBTB8OSQ8IWT0 167 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 DEPTORQ8TB45 409 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 PPP1R10Q96QC0 940 aaKnown RBP11.55□□□□□ -0.56
LIG1-213ENST00000596672 CLSTN3Q9BQT9 956 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 TRIM6Q9C030 488 aaPredicted RBP11.55□□□□□ -0.56
LIG1-213ENST00000596672 C2orf40Q9H1Z8 148 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 MRPL17Q9NRX2 175 aaKnown RBP11.55□□□□□ -0.56
LIG1-213ENST00000596672 LIMD1Q9UGP4 676 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 ADAM28Q9UKQ2 775 aa11.55□□□□□ -0.56
LIG1-213ENST00000596672 I3L4J1 428 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 N4BP3O15049 544 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 TGM5O43548 720 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 ITIH3Q06033 890 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 TUSC3Q13454 348 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 HSP90AA2PQ14568 343 aaPredicted RBP11.54□□□□□ -0.56
LIG1-213ENST00000596672 PTPAQ15257 358 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 ZRSR1Q15695 479 aaKnown RBP11.54□□□□□ -0.56
LIG1-213ENST00000596672 TPRNQ4KMQ1 711 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 RILPL1Q5EBL4 403 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 XKR4Q5GH76 650 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 ATF7IP2Q5U623 682 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 BMP8AQ7Z5Y6 402 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 SYT2Q8N9I0 419 aaPredicted RBP11.54□□□□□ -0.56
LIG1-213ENST00000596672 PRSS33Q8NF86 280 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 ST13P5Q8NFI4 369 aaPredicted RBP11.54□□□□□ -0.56
LIG1-213ENST00000596672 LNX1Q8TBB1 728 aaPredicted RBP11.54□□□□□ -0.56
LIG1-213ENST00000596672 KIFAP3Q92845 792 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 FIZ1Q96SL8 496 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 PHOX2BQ99453 314 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 NTPCRQ9BSD7 190 aaKnown RBP11.54□□□□□ -0.56
LIG1-213ENST00000596672 COLEC11Q9BWP8 271 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 IKZF4Q9H2S9 585 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 MAN1C1Q9NR34 630 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 DNM3Q9UQ16 869 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 TNFSF13BQ9Y275 285 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 ANK1P16157 1881 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 GVINP1Q7Z2Y8 2422 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 ZMYM2Q9UBW7 1377 aa11.54□□□□□ -0.56
LIG1-213ENST00000596672 EP300Q09472 2414 aaPredicted RBP11.53□□□□□ -0.56
LIG1-213ENST00000596672 SMIM28A0A1B0GU29 152 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 FSD2A1L4K1 749 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 CCDC169A6NNP5 214 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 K7ERI5 159 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 LAD1O00515 517 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 NRG2O14511 850 aaPredicted RBP11.53□□□□□ -0.56
LIG1-213ENST00000596672 URODP06132 367 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 GUCY2CP25092 1073 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 OSTNP61366 133 aa11.53□□□□□ -0.56
LIG1-213ENST00000596672 NCBP1Q09161 790 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms