RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 UBE4BO95155 1302 aa11.56□□□□□ -0.56
LIG1-210ENST00000596332 ARL5CA6NH57 179 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 GOLGA6L22H0YM25 854 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 PDXKO00764 312 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 CLIC2O15247 247 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 OGTO15294 1046 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 RECQL4O94761 1208 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 SMC2O95347 1197 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 EFEMP2O95967 443 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 SKIP12755 728 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 ITGA4P13612 1032 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 GARTP22102 1010 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 ACOT2P49753 483 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 OSTNP61366 133 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 TAP1Q03518 808 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 NCBP1Q09161 790 aaKnown RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 NOLC1Q14978 699 aaKnown RBP eCLIP11.55□□□□□ -0.56
LIG1-210ENST00000596332 KLHL40Q2TBA0 621 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 CD300LGQ6UXG3 332 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 SLC9A9Q8IVB4 645 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 CLP1Q92989 425 aaKnown RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 DUSP9Q99956 384 aaKnown RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 TMEM117Q9H0C3 514 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 NUP62CLQ9H1M0 184 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 TTYH1Q9H313 450 aaPredicted RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 PCIF1Q9H4Z3 704 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 RSAD1Q9HA92 442 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 TYW1Q9NV66 732 aaKnown RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 GIT1Q9Y2X7 761 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 INSL6Q9Y581 213 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 MRPL42Q9Y6G3 142 aaKnown RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 FNDC1Q4ZHG4 1894 aaPredicted RBP11.55□□□□□ -0.56
LIG1-210ENST00000596332 GBF1Q92538 1859 aa11.55□□□□□ -0.56
LIG1-210ENST00000596332 SMIM28A0A1B0GU29 152 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 GOLGA8IPA6NC78 632 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 EPOPA6NHQ4 379 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 GOLGA8JA6NMD2 632 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 LACTBL1A8MY62 500 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 TLL1O43897 1013 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 MBD3O95983 291 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 CA3P07451 260 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 KCNE1P15382 129 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 IBSPP21815 317 aaPredicted RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 DNAJB2P25686 324 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 MLH1P40692 756 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 CASP4P49662 377 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 SNRPFP62306 86 aaKnown RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 SOX4Q06945 474 aaPredicted RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 DSC1Q08554 894 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 NFIL3Q16649 462 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 NOMO2Q5JPE7 1267 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 ANKRD40Q6AI12 368 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 SLFN12LQ6IEE8 588 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 CMTR2Q8IYT2 770 aaKnown RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 RNF169Q8NCN4 708 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 CXorf38Q8TB03 319 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 PGBD4Q96DM1 585 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 SAAL1Q96ER3 474 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 BICD1Q96G01 975 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 BORCS6Q96GS4 357 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 FAM84AQ96KN4 292 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 SNX27Q96L92 541 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 PPP1R10Q96QC0 940 aaKnown RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 TCHPQ9BT92 498 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 FUCA2Q9BTY2 467 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 APOL6Q9BWW8 343 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 MTIF3Q9H2K0 278 aaKnown RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 NKX2-4Q9H2Z4 354 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 NRDE2Q9H7Z3 1164 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 TBC1D13Q9NVG8 400 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 RMND1Q9NWS8 449 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 HSPBP1Q9NZL4 362 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 CNTN3Q9P232 1028 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 ANKFY1Q9P2R3 1169 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 DNAJB4Q9UDY4 337 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 AGO2Q9UKV8 859 aaKnown RBP11.54□□□□□ -0.56
LIG1-210ENST00000596332 EXOC7Q9UPT5 735 aa11.54□□□□□ -0.56
LIG1-210ENST00000596332 TRIM49BA6NDI0 452 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 TBKBP1A7MCY6 615 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 F8W810 466 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 EXTL3O43909 919 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 CLTAP09496 248 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 CXCL8P10145 99 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 HARSP12081 509 aaKnown RBP11.53□□□□□ -0.56
LIG1-210ENST00000596332 FXR1P51114 621 aaKnown RBP eCLIP11.53□□□□□ -0.56
LIG1-210ENST00000596332 SCNN1GP51170 649 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 POU5F1Q01860 360 aaKnown RBP11.53□□□□□ -0.56
LIG1-210ENST00000596332 DPCR1Q3MIW9 517 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 C1orf220Q5T0J3 134 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 TTI2Q6NXR4 508 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 TMEM173Q86WV6 379 aaPredicted RBP11.53□□□□□ -0.56
LIG1-210ENST00000596332 CBWD2Q8IUF1 395 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 COLGALT2Q8IYK4 626 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 SYCP3Q8IZU3 236 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 TRIML1Q8N9V2 468 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 BCL7CQ8WUZ0 217 aaPredicted RBP11.53□□□□□ -0.56
LIG1-210ENST00000596332 POMGNT1Q8WZA1 660 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 ACAP3Q96P50 834 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 PAAF1Q9BRP4 392 aa11.53□□□□□ -0.56
LIG1-210ENST00000596332 ADPGKQ9BRR6 497 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms