RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 POLR3FQ9H1D9 316 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 SMARCAL1Q9NZC9 954 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 TPX2Q9ULW0 747 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 HYOU1Q9Y4L1 999 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 LCTP09848 1927 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 PTPRFP10586 1907 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 OTOFQ9HC10 1997 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 ANKRD33BA6NCL7 494 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 HMGB1P1B2RPK0 211 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 DDX3XO00571 662 aaKnown RBP eCLIP18.37■□□□□ 0.533e-6■■■□□ 15.7
SHKBP1-205ENST00000594973 HNRNPDLO14979 420 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 PGK2P07205 417 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 ATP4AP20648 1035 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 UBA1P22314 1058 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 POLGP54098 1239 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 BIRC2Q13490 618 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 CFAP58Q5T655 872 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 DPY19L2Q6NUT2 758 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 SH2D3CQ8N5H7 860 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 SPATA4Q8NEY3 305 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 U2AF1L4Q8WU68 220 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 SLC24A3Q9HC58 644 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 UBE2TQ9NPD8 197 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 PDLIM7Q9NR12 457 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 EHD2Q9NZN4 543 aa18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 PACSIN2Q9UNF0 486 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-205ENST00000594973 SYNGAP1Q96PV0 1343 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 IGSF9BQ9UPX0 1349 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 ICAM3P32942 547 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 XRCC4Q13426 336 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 LACTB2Q53H82 288 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 EAPPQ56P03 285 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 GLYCTKQ8IVS8 523 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 ARFGAP2Q8N6H7 521 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 HDAC7Q8WUI4 952 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 TMEM174Q8WUU8 243 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 SPIRE2Q8WWL2 714 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 POMGNT1Q8WZA1 660 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 TMEM143Q96AN5 459 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 BICD1Q96G01 975 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 POP1Q99575 1024 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 NTPCRQ9BSD7 190 aaKnown RBP18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 TXNRD2Q9NNW7 524 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 USP20Q9Y2K6 914 aa18.36■□□□□ 0.53
SHKBP1-205ENST00000594973 EPHX2P34913 555 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 MXI1P50539 228 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 C10orf76Q5T2E6 689 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 SLC39A4Q6P5W5 647 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 ARHGEF19Q8IW93 802 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 RSRC1Q96IZ7 334 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 IFT74Q96LB3 600 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 MAF1Q9H063 256 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 C17orf75Q9HAS0 396 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 SPDYE5A6NIY4 337 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 FOXN3O00409 490 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 CNMDO75829 334 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 MATR3P43243 847 aaKnown RBP eCLIP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 SNRPFP62306 86 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 EMC2Q15006 297 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 PTPROQ16827 1216 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 WDR78Q5VTH9 848 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 OPTNQ96CV9 577 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 CYFIP2Q96F07 1278 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 TMEM117Q9H0C3 514 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 GOLPH3Q9H4A6 298 aa18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 SEPT11Q9NVA2 429 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 MAFBQ9Y5Q3 323 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-205ENST00000594973 CXCL11O14625 94 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 MGRN1O60291 552 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 OATP04181 439 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 TCP1P17987 556 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 GBP2P32456 591 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 ANKRD20A8PQ5CZ79 823 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 CCDC181Q5TID7 509 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 KCTD16Q68DU8 428 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 LNX1Q8TBB1 728 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 ATP6V1G3Q96LB4 118 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 AGTPBP1Q9UPW5 1226 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 PCDHGC5Q9Y5F6 944 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 GRID2IPA4D2P6 1211 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 ZNF233A6NK53 670 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 LY6KQ17RY6 165 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 Q3C1V9 767 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 ZNF483Q8TF39 744 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 HVCN1Q96D96 273 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 MS4A14Q96JA4 679 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 SH3GL3Q99963 347 aa18.34■□□□□ 0.53
SHKBP1-205ENST00000594973 FARP2O94887 1054 aaPredicted RBP18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 ATG7O95352 703 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 KRT14P02533 472 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 CCNHP51946 323 aaPredicted RBP18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 SEC24CP53992 1094 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 NAA25Q14CX7 972 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 EPC2Q52LR7 807 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 USP50Q70EL3 339 aaPredicted RBP18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 TAS1R3Q7RTX0 852 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 ARMC9Q7Z3E5 817 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 IFT20Q8IY31 132 aa18.33■□□□□ 0.53
SHKBP1-205ENST00000594973 SCLT1Q96NL6 688 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms