RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TOPORSQ9NS56 1045 aaPredicted RBP16.45■□□□□ 0.22
UPF1-202ENST00000594243 CHMP5Q9NZZ3 219 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 ANKFY1Q9P2R3 1169 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 STK39Q9UEW8 545 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 EXOC7Q9UPT5 735 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 FAN1Q9Y2M0 1017 aa16.45■□□□□ 0.22
UPF1-202ENST00000594243 MYH11P35749 1972 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 COL4A4P53420 1690 aaPredicted RBP16.44■□□□□ 0.22
UPF1-202ENST00000594243 PRUNE2Q8WUY3 3088 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 NT5C1B-RDH14C9J2C7 533 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 ABLIM1O14639 778 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 GCNT3O95395 438 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 THP07101 528 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 PBX3P40426 434 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 AFMP43652 599 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 NOLC1Q14978 699 aaKnown RBP eCLIP16.44■□□□□ 0.22
UPF1-202ENST00000594243 KYAT1Q16773 422 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 TPRNQ4KMQ1 711 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 SLFN12LQ6IEE8 588 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 STXBP4Q6ZWJ1 553 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 COLGALT2Q8IYK4 626 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 GSTCDQ8NEC7 633 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 MICAL1Q8TDZ2 1067 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 TMEM169Q96HH4 297 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 STRA6Q9BX79 667 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 NSUN3Q9H649 340 aaKnown RBP16.44■□□□□ 0.22
UPF1-202ENST00000594243 TLR9Q9NR96 1032 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 TBC1D7Q9P0N9 293 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 DNAJB4Q9UDY4 337 aa16.44■□□□□ 0.22
UPF1-202ENST00000594243 MYO9BQ13459 2157 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 PVALEFA0A1B0GWK0 134 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 NRP1O14786 923 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 ACTN4O43707 911 aaKnown RBP16.43■□□□□ 0.22
UPF1-202ENST00000594243 MYL1P05976 194 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 HARSP12081 509 aaKnown RBP16.43■□□□□ 0.22
UPF1-202ENST00000594243 DNAJB1P25685 340 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 OR1G1P47890 313 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 SLC11A1P49279 550 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 NDUFA8P51970 172 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 OSTNP61366 133 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 DSC1Q08554 894 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 COASYQ13057 564 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 CAMK1Q14012 370 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 BMS1Q14692 1282 aaKnown RBP16.43■□□□□ 0.22
UPF1-202ENST00000594243 SKIV2LQ15477 1246 aaKnown RBP16.43■□□□□ 0.22
UPF1-202ENST00000594243 UNC13DQ70J99 1090 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 CEP120Q8N960 986 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 FSIP1Q8NA03 581 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 PPP2R3CQ969Q6 453 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 PAGE5Q96GU1 130 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 CCDC34Q96HJ3 373 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 IGSF21Q96ID5 467 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 ACCSQ96QU6 501 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 COLEC11Q9BWP8 271 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 TMEM206Q9H813 350 aa16.43■□□□□ 0.22
UPF1-202ENST00000594243 KIAA1671Q9BY89 1806 aa16.42■□□□□ 0.22
UPF1-202ENST00000594243 PPP1R37O75864 691 aa16.42■□□□□ 0.22
UPF1-202ENST00000594243 L1TD1Q5T7N2 865 aaKnown RBP16.42■□□□□ 0.22
UPF1-202ENST00000594243 BLZF1Q9H2G9 400 aa16.42■□□□□ 0.22
UPF1-202ENST00000594243 NGRNQ9NPE2 291 aaKnown RBP16.42■□□□□ 0.22
UPF1-202ENST00000594243 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.41■□□□□ 0.22
UPF1-202ENST00000594243 PTGESO14684 152 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 NCK2O43639 380 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 ZNF202O95125 648 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 CLTAP09496 248 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 ERVFC1P60507 584 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 TUSC3Q13454 348 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 CUL4BQ13620 913 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 POSTNQ15063 836 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 XKR4Q5GH76 650 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 KANK3Q6NY19 840 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 ALKAL1Q6UXT8 129 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 TMC7Q7Z402 723 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 DDX53Q86TM3 631 aaKnown RBP16.41■□□□□ 0.22
UPF1-202ENST00000594243 SYCP3Q8IZU3 236 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 HAPLN2Q9GZV7 340 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 STYXL1Q9Y6J8 313 aa16.41■□□□□ 0.22
UPF1-202ENST00000594243 CHD9Q3L8U1 2897 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 A0A0B4J269 797 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 ANKRD63C9JTQ0 380 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 DLL1O00548 723 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 OGTO15294 1046 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 B4GALT3O60512 393 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 CSPG5O95196 566 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 MYBP10242 640 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 CASP1P29466 404 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 IRS1P35568 1242 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 TCEAL5Q5H9L2 206 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 KRBA2Q6ZNG9 492 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 TCF25Q9BQ70 676 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 MSTO1Q9BUK6 570 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 GOLPH3LQ9H4A5 285 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 PLEKHA5Q9HAU0 1116 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 ENTPD7Q9NQZ7 604 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 SLC38A7Q9NVC3 462 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 COG5Q9UP83 839 aa16.4■□□□□ 0.22
UPF1-202ENST00000594243 SMIM28A0A1B0GU29 152 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 FSCN2O14926 492 aa16.39■□□□□ 0.21
UPF1-202ENST00000594243 EIF3DO15371 548 aaKnown RBP eCLIP16.39■□□□□ 0.21
UPF1-202ENST00000594243 PRPF6O94906 941 aaKnown RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms