RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 OTOP1Q7RTM1 612 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 SLC9A9Q8IVB4 645 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 ACER1Q8TDN7 264 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 SLC20A1Q8WUM9 679 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 KRT35Q92764 455 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 CDCA5Q96FF9 252 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 FIZ1Q96SL8 496 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 PRMT1Q99873 361 aaKnown RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 ELAC2Q9BQ52 826 aaKnown RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 WNT8AQ9H1J5 351 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 MTUS1Q9ULD2 1270 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 SLC12A4Q9UP95 1085 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 FAM170AA1A519 330 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 PIK3CDO00329 1044 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 RASGRF2O14827 1237 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 OPLAHO14841 1288 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 RIPK2O43353 540 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 RTN2O75298 545 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 ATP6V1G2O95670 118 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 MUTP22033 750 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 MARCKSL1P49006 195 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 CETN1Q12798 172 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 PPP2R5CQ13362 524 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 MYBPC2Q14324 1141 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 ODR4Q5SWX8 454 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 NOL9Q5SY16 702 aaKnown RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 CYFIP1Q7L576 1253 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 SYCP3Q8IZU3 236 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 CCDC63Q8NA47 563 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 LMO3Q8TAP4 145 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 EPS8L3Q8TE67 593 aaKnown RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 NACC1Q96RE7 527 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 GLIS2Q9BZE0 524 aaPredicted RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 AS3MTQ9HBK9 375 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 UBE2TQ9NPD8 197 aaPredicted RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 KCND2Q9NZV8 630 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.64□□□□□ -0.55
VPS4B-206ENST00000591475 FZD1Q9UP38 647 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 PCDHA3Q9Y5H8 950 aa11.64□□□□□ -0.55
VPS4B-206ENST00000591475 PASKQ96RG2 1323 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 CFAP73A6NFT4 308 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 CHMP2AO43633 222 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 PSMD10O75832 226 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 MTA2O94776 668 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 BMP3P12645 472 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 PTPRAP18433 802 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 COMTP21964 271 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 FGFR4P22455 802 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 COILP38432 576 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 IREB2P48200 963 aaKnown RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 PEX5P50542 639 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 PRKG1Q13976 671 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 MESDQ14696 234 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 CYP1B1Q16678 543 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 TNFAIP8L3Q5GJ75 292 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 MFSD5Q6N075 450 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 HIBCHQ6NVY1 386 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 DLK2Q6UY11 383 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 TRPM8Q7Z2W7 1104 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 CCDC105Q8IYK2 499 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 RPUSD2Q8IZ73 545 aaKnown RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 UHMK1Q8TAS1 419 aaKnown RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 N4BP2L2Q92802 583 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 SLC5A5Q92911 643 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 ART4Q93070 314 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 ROPN1BQ9BZX4 212 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 KIAA1683Q9H0B3 1180 aa11.63□□□□□ -0.55
VPS4B-206ENST00000591475 ROPN1Q9HAT0 212 aaPredicted RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 POLR2AP24928 1970 aaKnown RBP11.63□□□□□ -0.55
VPS4B-206ENST00000591475 ZBTB39O15060 712 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 POTEJP0CG39 1038 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 SLCO1A2P46721 670 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 AUHQ13825 339 aaKnown RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 CNGA2Q16280 664 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 TRMT10CQ7L0Y3 403 aaKnown RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 LDHDQ86WU2 507 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 SLC13A5Q86YT5 568 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 SPICE1Q8N0Z3 855 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 LPAR1Q92633 364 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 WDR18Q9BV38 432 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 CCDC113Q9H0I3 377 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 NOD2Q9HC29 1040 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 HOMER3Q9NSC5 361 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 CSADQ9Y600 493 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 EMSYQ7Z589 1322 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 P4HA2O15460 535 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 GAS7O60861 476 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 TAL1P17542 331 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 IFNAR2P48551 515 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 PDE6CP51160 858 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 E2F5Q15329 346 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 UBAP2Q5T6F2 1119 aaKnown RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 MAP1SQ66K74 1059 aaPredicted RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 INTS8Q75QN2 995 aaKnown RBP11.62□□□□□ -0.55
VPS4B-206ENST00000591475 ARHGEF19Q8IW93 802 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 TEX2Q8IWB9 1127 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 ZDHHC14Q8IZN3 488 aa11.62□□□□□ -0.55
VPS4B-206ENST00000591475 RDH13Q8NBN7 331 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms