RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	LEXM	Q3ZCV2	418 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	SEZ6	Q53EL9	994 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	SLC39A4	Q6P5W5	647 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	DYM	Q7RTS9	669 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	TMC7	Q7Z402	723 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	ZBTB33	Q86T24	672 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	SFR1	Q86XK3	245 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	RNF168	Q8IYW5	571 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	VPS52	Q8N1B4	723 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	TMEM130	Q8N3G9	435 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	EFHB	Q8N7U6	833 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	FEZF2	Q8TBJ5	459 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	MICAL1	Q8TDZ2	1067 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	DNAJC19	Q96DA6	116 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	ZNF396	Q96N95	335 aa	Predicted RBP	10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	ADPGK	Q9BRR6	497 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	NTPCR	Q9BSD7	190 aa	Known RBP	10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	MRPL4	Q9BYD3	311 aa	Known RBP	10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	FGFBP2	Q9BYJ0	223 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	PANK2	Q9BZ23	570 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	UBN1	Q9NPG3	1134 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	ANKFY1	Q9P2R3	1169 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	STK17A	Q9UEE5	414 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	C2orf16	Q68DN1	1984 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	TSC2	P49815	1807 aa		10.84	□□□□□ -0.67
PTPN2-208	ENST00000589216	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	GRXCR2	A6NFK2	248 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	CASTOR2	A6NHX0	329 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	TISP43	B9A030	160 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	PPP6R2	O75170	966 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	TBCA	O75347	108 aa	Known RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	BRD1	O95696	1058 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	KRT18	P05783	430 aa	Known RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	IGFBP6	P24592	240 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	TXLNA	P40222	546 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	STAT6	P42226	847 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	OR1G1	P47890	313 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	NDUFV1	P49821	464 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	KRT17	Q04695	432 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	KCNC3	Q14003	757 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	PTPN14	Q15678	1187 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	ZBTB41	Q5SVQ8	909 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	RRAGB	Q5VZM2	374 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	PTCRA	Q6ISU1	281 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	LLGL2	Q6P1M3	1020 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	MPZL3	Q6UWV2	235 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	TAS1R1	Q7RTX1	841 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	HAUS6	Q7Z4H7	955 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	DDX53	Q86TM3	631 aa	Known RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	HACE1	Q8IYU2	909 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	HASPIN	Q8TF76	798 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	STAM	Q92783	540 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	MSLNL	Q96KJ4	702 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	B3GALT6	Q96L58	329 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	RPS6KC1	Q96S38	1066 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	UHRF1	Q96T88	793 aa	Predicted RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	TMEM175	Q9BSA9	504 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	ZHX3	Q9H4I2	956 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	TLE6	Q9H808	572 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	PARVG	Q9HBI0	331 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	GOLGA2P5	Q9HBQ8	144 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	LARS	Q9P2J5	1176 aa	Known RBP	10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	KANSL3	Q9P2N6	904 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	CDH22	Q9UJ99	828 aa		10.83	□□□□□ -0.68
PTPN2-208	ENST00000589216	FAM189A1	O60320	539 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	CUTA	O60888	179 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	KIF4A	O95239	1232 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	CTSA	P10619	480 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	MCF2	P10911	925 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	CA8	P35219	290 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	DDIT3	P35638	169 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	GRM5	P41594	1212 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	SOX4	Q06945	474 aa	Predicted RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	SMC1A	Q14683	1233 aa	Known RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	NOLC1	Q14978	699 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	AAK1	Q2M2I8	961 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	MYCT1	Q8N699	235 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	DDX12P	Q92771	950 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	SNX27	Q96L92	541 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	ZMAT2	Q96NC0	199 aa	Known RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	FAM193B	Q96PV7	902 aa	Predicted RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	PPP1R10	Q96QC0	940 aa	Known RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	HERC2P3	Q9BVR0	1158 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	NGRN	Q9NPE2	291 aa	Known RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	CD320	Q9NPF0	282 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	CCDC39	Q9UFE4	941 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	PUF60	Q9UHX1	559 aa	Known RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	TBX20	Q9UMR3	447 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	PCDHA7	Q9UN72	937 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	FAN1	Q9Y2M0	1017 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	RBM19	Q9Y4C8	960 aa	Known RBP	10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	HCFC2	Q9Y5Z7	792 aa		10.82	□□□□□ -0.68
PTPN2-208	ENST00000589216	HNRNPDL	O14979	420 aa	Known RBP	10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	TRAK2	O60296	914 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	CLASP2	O75122	1294 aa	Known RBP	10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	TOM1L1	O75674	476 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	PPP1R37	O75864	691 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	PIGR	P01833	764 aa		10.81	□□□□□ -0.68
PTPN2-208	ENST00000589216	CASP1	P29466	404 aa		10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms