RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 PIDD1Q9HB75 910 aa12.9□□□□□ -0.34
LIG3-207ENST00000586119 IGSF9Q9P2J2 1179 aa12.9□□□□□ -0.34
LIG3-207ENST00000586119 EPS15L1Q9UBC2 864 aa12.9□□□□□ -0.34
LIG3-207ENST00000586119 SSX2IPQ9Y2D8 614 aa12.9□□□□□ -0.34
LIG3-207ENST00000586119 CASTOR2A6NHX0 329 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 LRRN2O75325 713 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 MED24O75448 989 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 TADA2AO75478 443 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 DCNP07585 359 aaKnown RBP12.89□□□□□ -0.35
LIG3-207ENST00000586119 LAMP2P13473 410 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 NCBP1Q09161 790 aaKnown RBP12.89□□□□□ -0.35
LIG3-207ENST00000586119 ST3GAL1Q11201 340 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 USP41Q3LFD5 358 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 SPECC1Q5M775 1068 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 SLC27A1Q6PCB7 646 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 CCDC51Q96ER9 411 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 NAP1L4Q99733 375 aaKnown RBP12.89□□□□□ -0.35
LIG3-207ENST00000586119 CLSTN3Q9BQT9 956 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 PRKD2Q9BZL6 878 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 SNTG2Q9NY99 539 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 WNT16Q9UBV4 365 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 STK39Q9UEW8 545 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 ADAM28Q9UKQ2 775 aa12.89□□□□□ -0.35
LIG3-207ENST00000586119 MYH15Q9Y2K3 1946 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 LRRIQ4A6NIV6 560 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 PTGESO14684 152 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 LIG1P18858 919 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 GUCY1B3Q02153 619 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 GRASPQ7Z6J2 395 aaPredicted RBP12.88□□□□□ -0.35
LIG3-207ENST00000586119 CATSPER3Q86XQ3 398 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 CEP57Q86XR8 500 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 NOSTRINQ8IVI9 506 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 DIS3L2Q8IYB7 885 aaKnown RBP12.88□□□□□ -0.35
LIG3-207ENST00000586119 NSUN7Q8NE18 718 aaKnown RBP12.88□□□□□ -0.35
LIG3-207ENST00000586119 LNX1Q8TBB1 728 aaPredicted RBP12.88□□□□□ -0.35
LIG3-207ENST00000586119 RTP3Q9BQQ7 232 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 FNIP2Q9P278 1114 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 NUMBLQ9Y6R0 609 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 R4GN57 208 aa12.88□□□□□ -0.35
LIG3-207ENST00000586119 EP300Q09472 2414 aaPredicted RBP12.87□□□□□ -0.35
LIG3-207ENST00000586119 ANHXE9PGG2 379 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 NEMFO60524 1076 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 NR1I2O75469 434 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 ZMYND10O75800 440 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 KIF4AO95239 1232 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 PAPLNO95428 1278 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 SRFP11831 508 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 GLULP15104 373 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 GRIK3Q13003 919 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 HSP90AA2PQ14568 343 aaPredicted RBP12.87□□□□□ -0.35
LIG3-207ENST00000586119 PCBP1Q15365 356 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIG3-207ENST00000586119 FAM171A1Q5VUB5 890 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 EEF1DP3Q658K8 133 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 PARM1Q6UWI2 310 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 STAMQ92783 540 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 GTF3C6Q969F1 213 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 NFKBIZQ9BYH8 718 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 RHOBTB2Q9BYZ6 727 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 FZD8Q9H461 694 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 PLEKHA4Q9H4M7 779 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 PDZD7Q9H5P4 517 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 TBC1D17Q9HA65 648 aa12.87□□□□□ -0.35
LIG3-207ENST00000586119 CCL16O15467 120 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 MCM7P33993 719 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 GPC5P78333 572 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 TUSC3Q13454 348 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 HTR4Q13639 388 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 ZNF174Q15697 407 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 NAB2Q15742 525 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 ECM1Q16610 540 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 POTEHQ6S545 545 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 CD300LGQ6UXG3 332 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 RSPO2Q6UXX9 243 aaPredicted RBP12.86□□□□□ -0.35
LIG3-207ENST00000586119 CYP26C1Q6V0L0 522 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 PPP4R3CPQ6ZMV5 832 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 ITFG1Q8TB96 612 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 HDAC7Q8WUI4 952 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 WASF1Q92558 559 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 FGF14Q92915 247 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 CCDC43Q96MW1 224 aaKnown RBP12.86□□□□□ -0.35
LIG3-207ENST00000586119 KIFC3Q9BVG8 833 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 FOXQ1Q9C009 403 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 DLGAP2Q9P1A6 1054 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 DCHS1Q96JQ0 3298 aa12.86□□□□□ -0.35
LIG3-207ENST00000586119 RECQL4O94761 1208 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 XRCC6P12956 609 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIG3-207ENST00000586119 FSHRP23945 695 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 CDCA2Q69YH5 1023 aaPredicted RBP12.85□□□□□ -0.35
LIG3-207ENST00000586119 HACE1Q8IYU2 909 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 TTPALQ9BTX7 342 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 BRMS1Q9HCU9 246 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIG3-207ENST00000586119 PRMT7Q9NVM4 692 aaPredicted RBP12.85□□□□□ -0.35
LIG3-207ENST00000586119 HCFC1R1Q9NWW0 138 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 ZDHHC7Q9NXF8 308 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.85□□□□□ -0.35
LIG3-207ENST00000586119 DPP7Q9UHL4 492 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 FBXW11Q9UKB1 542 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 GDAQ9Y2T3 454 aa12.85□□□□□ -0.35
LIG3-207ENST00000586119 MTF2Q9Y483 593 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms