RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 ZNF446Q9NWS9 450 aa12.16□□□□□ -0.46
LIG3-204ENST00000585740 ASAP2O43150 1006 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 ARIH2O95376 493 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 GZMAP12544 262 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 GCNT1Q02742 428 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 LAMC2Q13753 1193 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 TCEAL1Q15170 157 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 WDR44Q5JSH3 913 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 CDCA2Q69YH5 1023 aaPredicted RBP12.15□□□□□ -0.46
LIG3-204ENST00000585740 SV2AQ7L0J3 742 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 EEPD1Q7L9B9 569 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 SLFN11Q7Z7L1 901 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 GLYCTKQ8IVS8 523 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 RHOT2Q8IXI1 618 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 PPM1KQ8N3J5 372 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 MSL3Q8N5Y2 521 aaKnown RBP12.15□□□□□ -0.46
LIG3-204ENST00000585740 ZSWIM2Q8NEG5 633 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 SPATA33Q96N06 139 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 MSTO1Q9BUK6 570 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 MRPL4Q9BYD3 311 aaKnown RBP12.15□□□□□ -0.46
LIG3-204ENST00000585740 C1orf112Q9NSG2 853 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 SUCLA2Q9P2R7 463 aaPredicted RBP12.15□□□□□ -0.46
LIG3-204ENST00000585740 MORF4L1Q9UBU8 362 aa12.15□□□□□ -0.46
LIG3-204ENST00000585740 ZSWIM8A7E2V4 1837 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 A0A0B4J269 797 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 CCL15-CCL14A0A0B4J2E2 113 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 IGKV6-21A0A0C4DH24 114 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 RBM47A0AV96 593 aaKnown RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 PDHXO00330 501 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 PDE2AO00408 941 aaPredicted RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 ZNF185O15231 689 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 RTN2O75298 545 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 LRRN2O75325 713 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 KIF4AO95239 1232 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 PNMA6AP0CW24 399 aaPredicted RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 DLATP10515 647 aaKnown RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 TXNP10599 105 aaKnown RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 MATR3P43243 847 aaKnown RBP eCLIP12.14□□□□□ -0.47
LIG3-204ENST00000585740 HADHBP55084 474 aaKnown RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 BPIFB4P59827 614 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 GPS2Q13227 327 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 CAPSQ13938 189 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 PLCB4Q15147 1175 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 CCL15Q16663 113 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 LONRF2Q1L5Z9 754 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 ZNF792Q3KQV3 632 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 ZNF484Q5JVG2 852 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 C15orf39Q6ZRI6 1047 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 ARMCX2Q7L311 632 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 HDXQ7Z353 690 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 FBXO16Q8IX29 292 aaPredicted RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 RPUSD2Q8IZ73 545 aaKnown RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 LRRC57Q8N9N7 239 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 SPATA4Q8NEY3 305 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 OLIG1Q8TAK6 271 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 HELQQ8TDG4 1101 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 COG1Q8WTW3 980 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 SEMA4DQ92854 862 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 PNKPQ96T60 521 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 CGRRF1Q99675 332 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 ISCUQ9H1K1 167 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 EPC1Q9H2F5 836 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 ACBD3Q9H3P7 528 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 SEPT11Q9NVA2 429 aaKnown RBP12.14□□□□□ -0.47
LIG3-204ENST00000585740 AMFRQ9UKV5 643 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 IVNS1ABPQ9Y6Y0 642 aa12.14□□□□□ -0.47
LIG3-204ENST00000585740 NCK2O43639 380 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 TRPA1O75762 1119 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 FTCDO95954 541 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 GH1P01241 217 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 TFRCP02786 760 aaKnown RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 ZBTB48P10074 688 aaPredicted RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 USP8P40818 1118 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 PDE6CP51160 858 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 C2orf54Q08AI8 447 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 CLUL1Q15846 466 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 ZACNQ401N2 412 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 PPP1R2P3Q6NXS1 205 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 PEX26Q7Z412 305 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 ZNF677Q86XU0 584 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 C2orf69Q8N8R5 385 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 TAS1R2Q8TE23 839 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 PRPF31Q8WWY3 499 aaKnown RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 EMID1Q96A84 441 aaPredicted RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 KREMEN1Q96MU8 473 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 PARK7Q99497 189 aaKnown RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 TARS2Q9BW92 718 aaKnown RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 EFCC1Q9HA90 598 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 GBA2Q9HCG7 927 aaPredicted RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 SAGE1Q9NXZ1 904 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 RBAKQ9NYW8 714 aaPredicted RBP12.13□□□□□ -0.47
LIG3-204ENST00000585740 ERAP1Q9NZ08 941 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 COL1A2P08123 1366 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 ZNF236Q9UL36 1845 aa12.13□□□□□ -0.47
LIG3-204ENST00000585740 EVPLQ92817 2033 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 FAM155AB1AL88 458 aaPredicted RBP12.12□□□□□ -0.47
LIG3-204ENST00000585740 BTBD19C9JJ37 291 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 MAGEB2O15479 319 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 CLDN3O15551 220 aa12.12□□□□□ -0.47
LIG3-204ENST00000585740 TOM1L1O75674 476 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms