RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZNF396Q96N95 335 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-206ENST00000579558 CDT1Q9H211 546 aa26.24■■□□□ 1.79
SHMT1-206ENST00000579558 FAM13AO94988 1023 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 MAPTP10636 758 aaKnown RBP26.23■■□□□ 1.79
SHMT1-206ENST00000579558 DDIT3P35638 169 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 COASYQ13057 564 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 KCNC3Q14003 757 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 COLEC11Q9BWP8 271 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 STK17AQ9UEE5 414 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 IRAK3Q9Y616 596 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 NCOR1O75376 2440 aa26.23■■□□□ 1.79
SHMT1-206ENST00000579558 H0YCG3 227 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 PTGESO14684 152 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 CLASP2O75122 1294 aaKnown RBP26.22■■□□□ 1.79
SHMT1-206ENST00000579558 ZSCAN22P10073 491 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-206ENST00000579558 TMEM184AQ6ZMB5 413 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 ZBTB33Q86T24 672 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 SMRP1Q8NCR6 262 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 TCHPQ9BT92 498 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 PTPRHQ9HD43 1115 aa26.22■■□□□ 1.79
SHMT1-206ENST00000579558 TFIP11Q9UBB9 837 aaKnown RBP26.22■■□□□ 1.79
SHMT1-206ENST00000579558 F8W810 466 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 THP07101 528 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 NCKAP1LP55160 1127 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 TUSC3Q13454 348 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 PTPN14Q15678 1187 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 SMAD2Q15796 467 aaKnown RBP26.21■■□□□ 1.79
SHMT1-206ENST00000579558 RRAGBQ5VZM2 374 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 MPZL3Q6UWV2 235 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 MYCT1Q8N699 235 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 LINC00301Q8NCQ3 95 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 HERC2P3Q9BVR0 1158 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 CCDC94Q9BW85 323 aaPredicted RBP26.21■■□□□ 1.79
SHMT1-206ENST00000579558 CXCL16Q9H2A7 254 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 ZHX3Q9H4I2 956 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 PARVGQ9HBI0 331 aa26.21■■□□□ 1.79
SHMT1-206ENST00000579558 TBCAO75347 108 aaKnown RBP26.2■■□□□ 1.78
SHMT1-206ENST00000579558 F13A1P00488 732 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 SOD2P04179 222 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 MCF2P10911 925 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 PROZP22891 400 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 GRM5P41594 1212 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 ZNF131P52739 623 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 HAUS6Q7Z4H7 955 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 CEP120Q8N960 986 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 RABGGTAQ92696 567 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 CASP10Q92851 521 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 MRPL17Q9NRX2 175 aaKnown RBP26.2■■□□□ 1.78
SHMT1-206ENST00000579558 CACNG4Q9UBN1 327 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 PRKAG3Q9UGI9 489 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 HCFC2Q9Y5Z7 792 aa26.2■■□□□ 1.78
SHMT1-206ENST00000579558 CASTOR2A6NHX0 329 aa26.19■■□□□ 1.78
SHMT1-206ENST00000579558 SPTLC2O15270 562 aa26.19■■□□□ 1.78
SHMT1-206ENST00000579558 URODP06132 367 aa26.19■■□□□ 1.78
SHMT1-206ENST00000579558 HARSP12081 509 aaKnown RBP26.19■■□□□ 1.78
SHMT1-206ENST00000579558 YARSP54577 528 aaKnown RBP26.19■■□□□ 1.78
SHMT1-206ENST00000579558 OSTNP61366 133 aa26.19■■□□□ 1.78
SHMT1-206ENST00000579558 ANKRD54Q6NXT1 300 aa26.19■■□□□ 1.78
SHMT1-206ENST00000579558 ANKFY1Q9P2R3 1169 aa26.19■■□□□ 1.78
SHMT1-206ENST00000579558 BDP1A6H8Y1 2624 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 K7ENM7 598 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 ABLIM1O14639 778 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 TOM1L1O75674 476 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 YEATS4O95619 227 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 BRD1O95696 1058 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 SSTR3P32745 418 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 HSP90AA2PQ14568 343 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 FOXD4L6Q3SYB3 417 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 FUT10Q6P4F1 479 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 FOXD4L3Q6VB84 417 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 ZPBP2Q6X784 338 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 CCDC73Q6ZRK6 1079 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 TAS1R1Q7RTX1 841 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 RNF168Q8IYW5 571 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 GJD3Q8N144 294 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 BICD1Q96G01 975 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 ZBTB45Q96K62 511 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 PAAF1Q9BRP4 392 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 EMILIN2Q9BXX0 1053 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 CD320Q9NPF0 282 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 TOPORSQ9NS56 1045 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 ADAM28Q9UKQ2 775 aa26.18■■□□□ 1.78
SHMT1-206ENST00000579558 USP15Q9Y4E8 981 aaPredicted RBP26.18■■□□□ 1.78
SHMT1-206ENST00000579558 C2CD2LO14523 706 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 TRAK2O60296 914 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 PPP6R2O75170 966 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 EFEMP2O95967 443 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 GLUD2P49448 558 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 ZP2Q05996 745 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 PKP1Q13835 747 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 NOLC1Q14978 699 aaKnown RBP eCLIP26.17■■□□□ 1.78
SHMT1-206ENST00000579558 NAB2Q15742 525 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 GLRA4Q5JXX5 417 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 ADHFE1Q8IWW8 467 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 SSX2IPQ9Y2D8 614 aa26.17■■□□□ 1.78
SHMT1-206ENST00000579558 TRIP11Q15643 1979 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 TADA2AO75478 443 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 HOXB8P17481 243 aaPredicted RBP26.16■■□□□ 1.78
SHMT1-206ENST00000579558 SCP2P22307 547 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 STAT6P42226 847 aa26.16■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms