RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 MATR3P43243 847 aaKnown RBP eCLIP19.83■□□□□ 0.77
CCDC40-213ENST00000574933 LRRC63Q05C16 580 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 HSP90AA2PQ14568 343 aaPredicted RBP19.83■□□□□ 0.77
CCDC40-213ENST00000574933 DPCR1Q3MIW9 517 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 XKR4Q5GH76 650 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 CLLU1OSQ5K130 101 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 CRELD2Q6UXH1 353 aaPredicted RBP19.83■□□□□ 0.77
CCDC40-213ENST00000574933 ZC3H3Q8IXZ2 948 aaKnown RBP19.83■□□□□ 0.77
CCDC40-213ENST00000574933 THNSL1Q8IYQ7 743 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 ACAP3Q96P50 834 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 RSAD1Q9HA92 442 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 SNTG2Q9NY99 539 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 HSPBP1Q9NZL4 362 aa19.83■□□□□ 0.77
CCDC40-213ENST00000574933 CLIC2O15247 247 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 EXTL3O43909 919 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 OFD1O75665 1012 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 RECQL4O94761 1208 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 SASS6Q6UVJ0 657 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 ALKAL1Q6UXT8 129 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 TMEM192Q8IY95 271 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 GPD1LQ8N335 351 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 XXYLT1Q8NBI6 393 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 LPPQ93052 612 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 FUCA2Q9BTY2 467 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 TMEM117Q9H0C3 514 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 PLEKHA5Q9HAU0 1116 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 KIAA1586Q9HCI6 787 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 ANO10Q9NW15 660 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 DACH1Q9UI36 760 aa19.82■□□□□ 0.76
CCDC40-213ENST00000574933 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 UPP2O95045 317 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 NR3C1P04150 777 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 HARSP12081 509 aaKnown RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 ERCC5P28715 1186 aaPredicted RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 PMS1P54277 932 aaKnown RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 PAK1Q13153 545 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 SLC10A6Q3KNW5 377 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 ZBTB41Q5SVQ8 909 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 ANKRD40Q6AI12 368 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 TTI2Q6NXR4 508 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 GSTCDQ8NEC7 633 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 SP7Q8TDD2 431 aaPredicted RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 NELFBQ8WX92 580 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 CASD1Q96PB1 797 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 RAD9AQ99638 391 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 TSG101Q99816 390 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 PCIF1Q9H4Z3 704 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 TOPORSQ9NS56 1045 aaPredicted RBP19.81■□□□□ 0.76
CCDC40-213ENST00000574933 INSL6Q9Y581 213 aa19.81■□□□□ 0.76
CCDC40-213ENST00000574933 TTC26A0AVF1 554 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 BICDL2A1A5D9 508 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 MAPK13O15264 365 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 MEFVO15553 781 aaPredicted RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 FGFR1P11362 822 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 AKAP5P24588 427 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 RPL13P26373 211 aaKnown RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 TNFSF9P41273 254 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 MCCD1P59942 119 aaPredicted RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 ENOX2Q16206 610 aaKnown RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 STX1AQ16623 288 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 GLB1LQ6UWU2 654 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 TMCO2Q7Z6W1 182 aaPredicted RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 CD302Q8IX05 232 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 CMTR2Q8IYT2 770 aaKnown RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 RNF169Q8NCN4 708 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 ZSWIM2Q8NEG5 633 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 SNX27Q96L92 541 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 TSPAN18Q96SJ8 248 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 APOL6Q9BWW8 343 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 PARP2Q9UGN5 583 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 RWDD2AQ9UIY3 292 aa19.8■□□□□ 0.76
CCDC40-213ENST00000574933 COLQQ9Y215 455 aaPredicted RBP19.8■□□□□ 0.76
CCDC40-213ENST00000574933 ARL5CA6NH57 179 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 ACOT2P49753 483 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 YARSP54577 528 aaKnown RBP19.79■□□□□ 0.76
CCDC40-213ENST00000574933 OSTNP61366 133 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 FKBP3Q00688 224 aaKnown RBP19.79■□□□□ 0.76
CCDC40-213ENST00000574933 TYRO3Q06418 890 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 LRIT3Q3SXY7 679 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 SEZ6Q53EL9 994 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 NOMO2Q5JPE7 1267 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 FAM109BQ6ICB4 259 aaPredicted RBP19.79■□□□□ 0.76
CCDC40-213ENST00000574933 KLHL10Q6JEL2 608 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 BRSK2Q8IWQ3 736 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 HELQQ8TDG4 1101 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 SAAL1Q96ER3 474 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 MED15Q96RN5 788 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 GAD1Q99259 594 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 DUSP9Q99956 384 aaKnown RBP19.79■□□□□ 0.76
CCDC40-213ENST00000574933 FAM213AQ9BRX8 229 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 RPF1Q9H9Y2 349 aaKnown RBP19.79■□□□□ 0.76
CCDC40-213ENST00000574933 CNTN3Q9P232 1028 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 KANSL3Q9P2N6 904 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 CTNND2Q9UQB3 1225 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 PCDHA11Q9Y5I1 949 aa19.79■□□□□ 0.76
CCDC40-213ENST00000574933 TRIM49BA6NDI0 452 aa19.78■□□□□ 0.76
CCDC40-213ENST00000574933 ZNF233A6NK53 670 aa19.78■□□□□ 0.76
CCDC40-213ENST00000574933 CXCL8P10145 99 aa19.78■□□□□ 0.76
CCDC40-213ENST00000574933 KCNE1P15382 129 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms