RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 TIGD1Q96MW7 591 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 FAM193BQ96PV7 902 aaPredicted RBP12.07□□□□□ -0.48
CHD3-216ENST00000573936 CCDC94Q9BW85 323 aaPredicted RBP12.07□□□□□ -0.48
CHD3-216ENST00000573936 APOL6Q9BWW8 343 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 STRA6Q9BX79 667 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 BLZF1Q9H2G9 400 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 NXF3Q9H4D5 531 aaKnown RBP12.07□□□□□ -0.48
CHD3-216ENST00000573936 TMEM206Q9H813 350 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 TYW1Q9NV66 732 aaKnown RBP12.07□□□□□ -0.48
CHD3-216ENST00000573936 LMCD1Q9NZU5 365 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 TBC1D7Q9P0N9 293 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 USP20Q9Y2K6 914 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 PCDHB12Q9Y5F1 795 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 MRPL42Q9Y6G3 142 aaKnown RBP12.07□□□□□ -0.48
CHD3-216ENST00000573936 C5orf42Q9H799 3197 aa12.07□□□□□ -0.48
CHD3-216ENST00000573936 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 FAM86C2PA6NEL3 165 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 HNRNPDLO14979 420 aaKnown RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 INPPL1O15357 1258 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 EIF3DO15371 548 aaKnown RBP eCLIP12.06□□□□□ -0.48
CHD3-216ENST00000573936 PPP1R37O75864 691 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 SSTR3P32745 418 aaPredicted RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 YARSP54577 528 aaKnown RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 UBE2HP62256 183 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 NOLC1Q14978 699 aaKnown RBP eCLIP12.06□□□□□ -0.48
CHD3-216ENST00000573936 ZC2HC1CQ53FD0 456 aaPredicted RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 FAM26FQ5R3K3 315 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 ZBTB33Q86T24 672 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 ELOA2Q8IYF1 753 aaPredicted RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 GRAMD1CQ8IYS0 662 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 SYCP3Q8IZU3 236 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 ENGASEQ8NFI3 743 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 P2RX5Q93086 422 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 GBP4Q96PP9 640 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 RPS6KC1Q96S38 1066 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 C17orf80Q9BSJ5 609 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 C11orf84Q9BUA3 381 aaPredicted RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 CDT1Q9H211 546 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 RNF39Q9H2S5 420 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 CWH43Q9H720 699 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 TOPORSQ9NS56 1045 aaPredicted RBP12.06□□□□□ -0.48
CHD3-216ENST00000573936 EXOC1Q9NV70 894 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 SNTG2Q9NY99 539 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 INPP5FQ9Y2H2 1132 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 HES2Q9Y543 173 aa12.06□□□□□ -0.48
CHD3-216ENST00000573936 MYH11P35749 1972 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 ARL5CA6NH57 179 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 MEIS3P2A8K0S8 358 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 PI4K2BG5E9Z4 385 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 H3BNC9 293 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 KIF20AO95235 890 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 LINC00271P0C7V0 271 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 MYBP10242 640 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 AKAP5P24588 427 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 PPM1AP35813 382 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 EHHADHQ08426 723 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 GPM6BQ13491 265 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 SNW1Q13573 536 aaKnown RBP12.05□□□□□ -0.48
CHD3-216ENST00000573936 LRRC55Q6ZSA7 311 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 COLGALT1Q8NBJ5 622 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 ZBTB45Q96K62 511 aaPredicted RBP12.05□□□□□ -0.48
CHD3-216ENST00000573936 ZNF558Q96NG5 402 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 ACAP3Q96P50 834 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 GAD1Q99259 594 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 ANKFY1Q9P2R3 1169 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 UBE4BO95155 1302 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 TRIOO75962 3097 aa12.05□□□□□ -0.48
CHD3-216ENST00000573936 A0A0B4J269 797 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 GOLGA6L22H0YM25 854 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 ABLIM1O14639 778 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 OGTO15294 1046 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 KLRC4O43908 158 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 KINO60870 393 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 PRPF40AO75400 957 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 NR1I2O75469 434 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 RECQL4O94761 1208 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 PRPF6O94906 941 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 RPN1P04843 607 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 ALDH2P05091 517 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 HARSP12081 509 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 ALADP13716 330 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 CASP1P29466 404 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 MLH1P40692 756 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 ALDH7A1P49419 539 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 SNRPFP62306 86 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 DPYDQ12882 1025 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 GRIK3Q13003 919 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 KCNB1Q14721 858 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 PTPROQ16827 1216 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 KMT5BQ4FZB7 885 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 KCNT2Q6UVM3 1135 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 ALYREFQ86V81 257 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 THNSL1Q8IYQ7 743 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 ZNF507Q8TCN5 953 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 TMEM175Q9BSA9 504 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 GTPBP4Q9BZE4 634 aaKnown RBP12.04□□□□□ -0.48
CHD3-216ENST00000573936 LMAN2LQ9H0V9 348 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 NRDE2Q9H7Z3 1164 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 TBC1D13Q9NVG8 400 aa12.04□□□□□ -0.48
CHD3-216ENST00000573936 RMND1Q9NWS8 449 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms