RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 PCDHGA11Q9Y5H2 935 aa8.27□□□□□ -1.09
NUP88-205ENST00000572809 COL4A4P53420 1690 aaPredicted RBP8.27□□□□□ -1.09
NUP88-205ENST00000572809 RALGAPA2Q2PPJ7 1873 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 NLRC5Q86WI3 1866 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 TRANK1O15050 2925 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 ZNF623O75123 536 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 MED24O75448 989 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 FGF18O76093 207 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 OR52Z1P0C646 297 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 KCNA5P22460 613 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 DNAJB1P25685 340 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 PHKA2P46019 1235 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 RARRES1P49788 294 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 UBE3AQ05086 875 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 POU5F1BQ06416 359 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 DHX9Q08211 1270 aaKnown RBP8.26□□□□□ -1.09
NUP88-205ENST00000572809 NCBP1Q09161 790 aaKnown RBP8.26□□□□□ -1.09
NUP88-205ENST00000572809 PDIA5Q14554 519 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 LEXMQ3ZCV2 418 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 LRRC55Q6ZSA7 311 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 EP400NLQ6ZTU2 488 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 C4orf32Q8N8J7 132 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 COLGALT1Q8NBJ5 622 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 RNF149Q8NC42 400 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 ERMNQ8TAM6 284 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 MICAL1Q8TDZ2 1067 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 PABPC5Q96DU9 382 aaKnown RBP8.26□□□□□ -1.09
NUP88-205ENST00000572809 CCDC43Q96MW1 224 aaKnown RBP8.26□□□□□ -1.09
NUP88-205ENST00000572809 TBC1D32Q96NH3 1257 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 POLR3CQ9BUI4 534 aaPredicted RBP8.26□□□□□ -1.09
NUP88-205ENST00000572809 IGFLR1Q9H665 355 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 MINDY3Q9H8M7 445 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 XPNPEP1Q9NQW7 623 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 FAM105AQ9NUU6 356 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 RNF19AQ9NV58 838 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 PUF60Q9UHX1 559 aaKnown RBP8.26□□□□□ -1.09
NUP88-205ENST00000572809 UNC80Q8N2C7 3258 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 EYSQ5T1H1 3165 aa8.26□□□□□ -1.09
NUP88-205ENST00000572809 A0A0C4DFX4 3053 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 SLC35F4A4IF30 521 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 H3BQV1 296 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 CSPG5O95196 566 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 ATF7P17544 494 aaPredicted RBP8.25□□□□□ -1.09
NUP88-205ENST00000572809 LAG3P18627 525 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 MUTP22033 750 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 RPA1P27694 616 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 GJB2P29033 226 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 HOXA11P31270 313 aaPredicted RBP8.25□□□□□ -1.09
NUP88-205ENST00000572809 ARL2P36404 184 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 TOB1P50616 345 aaPredicted RBP8.25□□□□□ -1.09
NUP88-205ENST00000572809 RAB27AP51159 221 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 PTENP60484 403 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 PLCB3Q01970 1234 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 KRT17Q04695 432 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 HYAL1Q12794 435 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 TFDP1Q14186 410 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 PCBP1Q15365 356 aaKnown RBP eCLIP8.25□□□□□ -1.09
NUP88-205ENST00000572809 LONRF3Q496Y0 759 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 CLLU1OSQ5K130 101 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 MCTP1Q6DN14 999 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 KCNT2Q6UVM3 1135 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 SV2AQ7L0J3 742 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 MAEAQ7L5Y9 396 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 THNSL1Q8IYQ7 743 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 LRRC43Q8N309 656 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 TPCN2Q8NHX9 752 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.25□□□□□ -1.09
NUP88-205ENST00000572809 HELQQ8TDG4 1101 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 PPP2R3CQ969Q6 453 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 PGBD4Q96DM1 585 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 ZNF558Q96NG5 402 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 HINFPQ9BQA5 517 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 AGPAT5Q9NUQ2 364 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 CLDND1Q9NY35 253 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 LRWD1Q9UFC0 647 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 DBR1Q9UK59 544 aaKnown RBP8.25□□□□□ -1.09
NUP88-205ENST00000572809 SMC3Q9UQE7 1217 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.25□□□□□ -1.09
NUP88-205ENST00000572809 PCDHB6Q9Y5E3 794 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 PCDHB2Q9Y5E7 798 aa8.25□□□□□ -1.09
NUP88-205ENST00000572809 FNDC1Q4ZHG4 1894 aaPredicted RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 H3BQ06 376 aaPredicted RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 INO80B-WBP1J3KQ70 363 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 ERVH48-1M5A8F1 160 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 LAD1O00515 517 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 USO1O60763 962 aaKnown RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 OFD1O75665 1012 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 ERLIN2O94905 339 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 GLRA2P23416 452 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 AXLP30530 894 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 LTBRP36941 435 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 CCT6AP40227 531 aaKnown RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 ALDH7A1P49419 539 aaKnown RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 ERVFC1P60507 584 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 ADAM15Q13444 863 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 COL19A1Q14993 1142 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 RILPL1Q5EBL4 403 aa8.24□□□□□ -1.09
NUP88-205ENST00000572809 INTS6LQ5JSJ4 861 aaKnown RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 LARP1BQ659C4 914 aaKnown RBP8.24□□□□□ -1.09
NUP88-205ENST00000572809 PDE12Q6L8Q7 609 aaKnown RBP8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms