RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CEP250Q9BV73 2442 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 CCDC195A0A1B0GUA6 201 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 KRBA1A5PL33 1030 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 TGM5O43548 720 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 MARCH6O60337 910 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 USO1O60763 962 aaKnown RBP7.45□□□□□ -1.22
VPS53-213ENST00000572334 URODP06132 367 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 RPL17P18621 184 aaKnown RBP7.45□□□□□ -1.22
VPS53-213ENST00000572334 GLUD2P49448 558 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 CLCN5P51795 746 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 NEK4P51957 841 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 NUBP1P53384 320 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 GUCY1B3Q02153 619 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 GRIK3Q13003 919 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 TFDP1Q14186 410 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 RTP2Q5QGT7 225 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 EEF1DP3Q658K8 133 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 ASTLQ6HA08 431 aaPredicted RBP7.45□□□□□ -1.22
VPS53-213ENST00000572334 SLC27A1Q6PCB7 646 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 CD300LGQ6UXG3 332 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 CCDC149Q6ZUS6 474 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 MAEAQ7L5Y9 396 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 ASCL5Q7RTU5 278 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 GPR65Q8IYL9 337 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 KIF2CQ99661 725 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 POLR3CQ9BUI4 534 aaPredicted RBP7.45□□□□□ -1.22
VPS53-213ENST00000572334 NT5C3AQ9H0P0 336 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 PDZD7Q9H5P4 517 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 POLD4Q9HCU8 107 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 TUFT1Q9NNX1 390 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 FNIP2Q9P278 1114 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 EPS15L1Q9UBC2 864 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 DUSP12Q9UNI6 340 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 CLUHO75153 1309 aa7.45□□□□□ -1.22
VPS53-213ENST00000572334 DMXL1Q9Y485 3027 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 ADAM12O43184 909 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 GFRA3O60609 400 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 KIF4AO95239 1232 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 GLUD1P00367 558 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 C1RP00736 705 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 ADH1AP07327 375 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 RPA1P27694 616 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 MCM7P33993 719 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 NBL1P41271 181 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 TDGQ13569 410 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 PRSS55Q6UWB4 352 aaPredicted RBP7.44□□□□□ -1.22
VPS53-213ENST00000572334 OTOP3Q7RTS5 596 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 PALB2Q86YC2 1186 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 GLYCTKQ8IVS8 523 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 TMEM87AQ8NBN3 555 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 LNX1Q8TBB1 728 aaPredicted RBP7.44□□□□□ -1.22
VPS53-213ENST00000572334 HDAC7Q8WUI4 952 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 ATOH1Q92858 354 aaPredicted RBP7.44□□□□□ -1.22
VPS53-213ENST00000572334 ACSF2Q96CM8 615 aaPredicted RBP7.44□□□□□ -1.22
VPS53-213ENST00000572334 PRIMPOLQ96LW4 560 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 CLSTN3Q9BQT9 956 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 COLEC11Q9BWP8 271 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 BRMS1Q9HCU9 246 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 SNTG2Q9NY99 539 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 ADAM28Q9UKQ2 775 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 CACNA1AO00555 2505 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 COL4A2P08572 1712 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 FRYLO94915 3013 aa7.44□□□□□ -1.22
VPS53-213ENST00000572334 PRR23AA6NEV1 266 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 CASTOR2A6NHX0 329 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 LRRIQ4A6NIV6 560 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 ANHXE9PGG2 379 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 MEFVO15553 781 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 ST18O60284 1047 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 ZMYND10O75800 440 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 RECQL4O94761 1208 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 CYP11B2P19099 503 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 AOC1P19801 751 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 ATP2B1P20020 1258 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 TOB1P50616 345 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 TUSC3Q13454 348 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 HSP90AA2PQ14568 343 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 NBR1Q14596 966 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 ZNF174Q15697 407 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 IL17AQ16552 155 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 USP41Q3LFD5 358 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 NT5DC1Q5TFE4 455 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 PADI6Q6TGC4 694 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 RSPO2Q6UXX9 243 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 CYP26C1Q6V0L0 522 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 TAS1R3Q7RTX0 852 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 NOSTRINQ8IVI9 506 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 CCDC83Q8IWF9 413 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 DAW1Q8N136 415 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 SLC44A3Q8N4M1 653 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 MCPH1Q8NEM0 835 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 FLCNQ8NFG4 579 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 ST13P5Q8NFI4 369 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 HASPINQ8TF76 798 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 RIN2Q8WYP3 895 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 SMG7Q92540 1137 aaKnown RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 NACC1Q96RE7 527 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 RPP25Q9BUL9 199 aaKnown RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 KIFC3Q9BVG8 833 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 PRKD2Q9BZL6 878 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms