RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 FNIP2Q9P278 1114 aa21.32■■□□□ 1
NUP88-203ENST00000572019 SIT1Q9Y3P8 196 aa21.32■■□□□ 1
NUP88-203ENST00000572019 CYP46A1Q9Y6A2 500 aa21.32■■□□□ 1
NUP88-203ENST00000572019 TBX3O15119 743 aa21.31■■□□□ 1
NUP88-203ENST00000572019 CTDNEP1O95476 244 aa21.31■■□□□ 1
NUP88-203ENST00000572019 GPC5P78333 572 aa21.31■■□□□ 1
NUP88-203ENST00000572019 NR5A1Q13285 461 aa21.31■■□□□ 1
NUP88-203ENST00000572019 MXD4Q14582 209 aaPredicted RBP21.31■■□□□ 1
NUP88-203ENST00000572019 USP41Q3LFD5 358 aa21.31■■□□□ 1
NUP88-203ENST00000572019 DCLRE1AQ6PJP8 1040 aa21.31■■□□□ 1
NUP88-203ENST00000572019 EXOC8Q8IYI6 725 aa21.31■■□□□ 1
NUP88-203ENST00000572019 EIF2AK1Q9BQI3 630 aaKnown RBP21.31■■□□□ 1
NUP88-203ENST00000572019 CLSTN3Q9BQT9 956 aa21.31■■□□□ 1
NUP88-203ENST00000572019 GPRC5CQ9NQ84 441 aa21.31■■□□□ 1
NUP88-203ENST00000572019 SLC2A4RGQ9NR83 387 aa21.31■■□□□ 1
NUP88-203ENST00000572019 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.31■■□□□ 1
NUP88-203ENST00000572019 USP20Q9Y2K6 914 aa21.31■■□□□ 1
NUP88-203ENST00000572019 MTF2Q9Y483 593 aaPredicted RBP21.31■■□□□ 1
NUP88-203ENST00000572019 NCOR2Q9Y618 2525 aa21.3■■□□□ 1
NUP88-203ENST00000572019 CASTOR2A6NHX0 329 aa21.3■■□□□ 1
NUP88-203ENST00000572019 FSHRP23945 695 aa21.3■■□□□ 1
NUP88-203ENST00000572019 PJA1Q8NG27 643 aa21.3■■□□□ 1
NUP88-203ENST00000572019 TNFRSF25Q93038 417 aa21.3■■□□□ 1
NUP88-203ENST00000572019 NXPE3Q969Y0 559 aa21.3■■□□□ 1
NUP88-203ENST00000572019 HSD17B14Q9BPX1 270 aa21.3■■□□□ 1
NUP88-203ENST00000572019 TRIM6Q9C030 488 aaPredicted RBP21.3■■□□□ 1
NUP88-203ENST00000572019 PARP2Q9UGN5 583 aa21.3■■□□□ 1
NUP88-203ENST00000572019 DPP7Q9UHL4 492 aa21.3■■□□□ 1
NUP88-203ENST00000572019 FBXW11Q9UKB1 542 aa21.3■■□□□ 1
NUP88-203ENST00000572019 A0A1B0GUA9 196 aa21.29■■□□□ 1
NUP88-203ENST00000572019 PTGESO14684 152 aa21.29■■□□□ 1
NUP88-203ENST00000572019 REC8O95072 547 aa21.29■■□□□ 1
NUP88-203ENST00000572019 KIF4AO95239 1232 aa21.29■■□□□ 1
NUP88-203ENST00000572019 RARRES1P49788 294 aa21.29■■□□□ 1
NUP88-203ENST00000572019 GRIK3Q13003 919 aa21.29■■□□□ 1
NUP88-203ENST00000572019 HSP90AA2PQ14568 343 aaPredicted RBP21.29■■□□□ 1
NUP88-203ENST00000572019 MAEAQ7L5Y9 396 aa21.29■■□□□ 1
NUP88-203ENST00000572019 C1orf210Q8IVY1 113 aa21.29■■□□□ 1
NUP88-203ENST00000572019 FAM177A1Q8N128 213 aaPredicted RBP21.29■■□□□ 1
NUP88-203ENST00000572019 ITFG1Q8TB96 612 aa21.29■■□□□ 1
NUP88-203ENST00000572019 PIGOQ8TEQ8 1089 aa21.29■■□□□ 1
NUP88-203ENST00000572019 POLR3FQ9H1D9 316 aaPredicted RBP21.29■■□□□ 1
NUP88-203ENST00000572019 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.29■■□□□ 1
NUP88-203ENST00000572019 CCL16O15467 120 aa21.28■■□□□ 1
NUP88-203ENST00000572019 MARCH6O60337 910 aa21.28■■□□□ 1
NUP88-203ENST00000572019 EDN1P05305 212 aa21.28■■□□□ 1
NUP88-203ENST00000572019 POU5F1BQ06416 359 aa21.28■■□□□ 1
NUP88-203ENST00000572019 SNW1Q13573 536 aaKnown RBP21.28■■□□□ 1
NUP88-203ENST00000572019 TFDP1Q14186 410 aa21.28■■□□□ 1
NUP88-203ENST00000572019 PCBP1Q15365 356 aaKnown RBP eCLIP21.28■■□□□ 1
NUP88-203ENST00000572019 SLC27A1Q6PCB7 646 aa21.28■■□□□ 1
NUP88-203ENST00000572019 ELMSAN1Q6PJG2 1045 aa21.28■■□□□ 1
NUP88-203ENST00000572019 POTEHQ6S545 545 aa21.28■■□□□ 1
NUP88-203ENST00000572019 LNX1Q8TBB1 728 aaPredicted RBP21.28■■□□□ 1
NUP88-203ENST00000572019 HCFC1R1Q9NWW0 138 aa21.28■■□□□ 1
NUP88-203ENST00000572019 TPCN1Q9ULQ1 816 aa21.28■■□□□ 1
NUP88-203ENST00000572019 STK36Q9NRP7 1315 aa21.28■■□□□ 1
NUP88-203ENST00000572019 NR1I2O75469 434 aa21.27■■□□□ 1
NUP88-203ENST00000572019 TADA2AO75478 443 aa21.27■■□□□ 1
NUP88-203ENST00000572019 LYPLA2O95372 231 aa21.27■■□□□ 1
NUP88-203ENST00000572019 STARD6P59095 220 aa21.27■■□□□ 1
NUP88-203ENST00000572019 NAB2Q15742 525 aa21.27■■□□□ 1
NUP88-203ENST00000572019 FAM171A1Q5VUB5 890 aa21.27■■□□□ 1
NUP88-203ENST00000572019 CPLX2Q6PUV4 134 aaKnown RBP21.27■■□□□ 1
NUP88-203ENST00000572019 SUMF1Q8NBK3 374 aa21.27■■□□□ 1
NUP88-203ENST00000572019 FGF13Q92913 245 aa21.27■■□□□ 1
NUP88-203ENST00000572019 NFKBIZQ9BYH8 718 aa21.27■■□□□ 1
NUP88-203ENST00000572019 SEMA4AQ9H3S1 761 aa21.27■■□□□ 1
NUP88-203ENST00000572019 PDRG1Q9NUG6 133 aa21.27■■□□□ 1
NUP88-203ENST00000572019 CDH7Q9ULB5 785 aa21.27■■□□□ 1
NUP88-203ENST00000572019 SPTBN2O15020 2390 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 USO1O60763 962 aaKnown RBP21.26■□□□□ 0.99
NUP88-203ENST00000572019 DGAT1O75907 488 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 C1RP00736 705 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 C8AP07357 584 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 FDPSP14324 419 aaKnown RBP21.26■□□□□ 0.99
NUP88-203ENST00000572019 CD72P21854 359 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 CEP57Q86XR8 500 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 GPR65Q8IYL9 337 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 SLFN12Q8IYM2 578 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 BSNDQ8WZ55 320 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 TM6SF1Q9BZW5 370 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 ANKEF1Q9NU02 776 aa21.26■□□□□ 0.99
NUP88-203ENST00000572019 SF3B1O75533 1304 aaKnown RBP eCLIP21.26■□□□□ 0.999e-6■■■■■ 68.9
NUP88-203ENST00000572019 NCBP1Q09161 790 aaKnown RBP21.25■□□□□ 0.99
NUP88-203ENST00000572019 TUSC3Q13454 348 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 PSMD5Q16401 504 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 RSPO2Q6UXX9 243 aaPredicted RBP21.25■□□□□ 0.99
NUP88-203ENST00000572019 PIK3R5Q8WYR1 880 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 HINFPQ9BQA5 517 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 KXD1Q9BQD3 176 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 TTPALQ9BTX7 342 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 DDX23Q9BUQ8 820 aaKnown RBP21.25■□□□□ 0.99
NUP88-203ENST00000572019 PDZD7Q9H5P4 517 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 SNTG2Q9NY99 539 aa21.25■□□□□ 0.99
NUP88-203ENST00000572019 LRRIQ4A6NIV6 560 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 RECQL4O94761 1208 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 PPM1LQ5SGD2 360 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 DGLUCYQ7Z3D6 616 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 HACE1Q8IYU2 909 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms