RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 AKAP5P24588 427 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 IGFBP6P24592 240 aaPredicted RBP10.15□□□□□ -0.78
VPS35-211ENST00000569950 CCNE1P24864 410 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 RAB27AP51159 221 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 ZSCAN23Q3MJ62 389 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 DCAF4L1Q3SXM0 396 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 C1orf220Q5T0J3 134 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 ANKRD40Q6AI12 368 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 IRF2BP1Q8IU81 584 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 CBWD2Q8IUF1 395 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 NPAS4Q8IUM7 802 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 SLC9A9Q8IVB4 645 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 HERC6Q8IVU3 1022 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 SP7Q8TDD2 431 aaPredicted RBP10.15□□□□□ -0.78
VPS35-211ENST00000569950 SAAL1Q96ER3 474 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 CCDC34Q96HJ3 373 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 ZFP42Q96MM3 310 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 ZMAT2Q96NC0 199 aaKnown RBP10.15□□□□□ -0.78
VPS35-211ENST00000569950 CASD1Q96PB1 797 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 PCIF1Q9H4Z3 704 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 TMEM206Q9H813 350 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 SNTG2Q9NY99 539 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 HSPBP1Q9NZL4 362 aa10.15□□□□□ -0.78
VPS35-211ENST00000569950 COLQQ9Y215 455 aaPredicted RBP10.15□□□□□ -0.78
VPS35-211ENST00000569950 VWA8A3KMH1 1905 aa10.15□□□□□ -0.79
VPS35-211ENST00000569950 SYCE3A1L190 88 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 GOLGA8IPA6NC78 632 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 GOLGA8JA6NMD2 632 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 CLDN3O15551 220 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 EFCAB14O75071 495 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 NR3C1P04150 777 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 STAG3L1P0CL83 205 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 ATXN8OSP0DMR3 200 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 CXCL8P10145 99 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 ACTN1P12814 892 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 MYOGP15173 224 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 ACOT2P49753 483 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 OSTNP61366 133 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 SNRPFP62306 86 aaKnown RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 TYRO3Q06418 890 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 NCAPHQ15003 741 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 ZBTB6Q15916 424 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 SKOR2Q2VWA4 1001 aaPredicted RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 EDRF1Q3B7T1 1238 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 THNSL1Q8IYQ7 743 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 TDHQ8IZJ6 230 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 MLKLQ8NB16 471 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 CXorf38Q8TB03 319 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 PHOSPHO2Q8TCD6 241 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 P2RX5Q93086 422 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 BICD1Q96G01 975 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 DHTKD1Q96HY7 919 aaPredicted RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 SNX27Q96L92 541 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 RNPC3Q96LT9 517 aaKnown RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 MSTO1Q9BUK6 570 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 AGO2Q9UKV8 859 aaKnown RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 EXOC7Q9UPT5 735 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 CTNND2Q9UQB3 1225 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 YBX2Q9Y2T7 364 aaKnown RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 COL4A4P53420 1690 aaPredicted RBP10.14□□□□□ -0.79
VPS35-211ENST00000569950 TSC2P49815 1807 aa10.14□□□□□ -0.79
VPS35-211ENST00000569950 ARL5CA6NH57 179 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 EXTL3O43909 919 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 AKAP3O75969 853 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 AMHP03971 560 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 CLTAP09496 248 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 HARSP12081 509 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 ATP2A2P16615 1042 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 PBX2P40425 430 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 RABGGTBP53611 331 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 STX17P56962 302 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 SOX4Q06945 474 aaPredicted RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 PRPF38BQ5VTL8 546 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 SLFN12LQ6IEE8 588 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 STXBP4Q6ZWJ1 553 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 BRSK2Q8IWQ3 736 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 EFCAB13Q8IY85 973 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 SYCP3Q8IZU3 236 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 HELQQ8TDG4 1101 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 NELFBQ8WX92 580 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 POMGNT1Q8WZA1 660 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 CCDC47Q96A33 483 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 EEF2KMTQ96G04 330 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 MFSD14AQ96MC6 490 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 PPP1R10Q96QC0 940 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 SLC9A7Q96T83 725 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 GAD1Q99259 594 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 GTPBP4Q9BZE4 634 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 CWH43Q9H720 699 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 KLK14Q9P0G3 267 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 CNTN3Q9P232 1028 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 CGNQ9P2M7 1197 aaKnown RBP10.13□□□□□ -0.79
VPS35-211ENST00000569950 SLC4A7Q9Y6M7 1214 aa10.13□□□□□ -0.79
VPS35-211ENST00000569950 ZBBXA8MT70 800 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 LACTBL1A8MY62 500 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 SOX1O00570 391 aaPredicted RBP10.12□□□□□ -0.79
VPS35-211ENST00000569950 DDHD2O94830 711 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 UPP2O95045 317 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 EFEMP2O95967 443 aa10.12□□□□□ -0.79
VPS35-211ENST00000569950 ITGA4P13612 1032 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms