RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 MFAP3P55082 362 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 BACE1P56817 501 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 SNX1Q13596 522 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 SV2AQ7L0J3 742 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 CCDC25Q86WR0 208 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 PASD1Q8IV76 773 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 CCDC60Q8IWA6 550 aaPredicted RBP9.41□□□□□ -0.9
LINC00558-201ENST00000569422 PARD3BQ8TEW8 1205 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 CPA5Q8WXQ8 436 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 SYT11Q9BT88 431 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 TRIM7Q9C029 511 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 ANKFY1Q9P2R3 1169 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 NOVA2Q9UNW9 492 aaKnown RBP9.41□□□□□ -0.9
LINC00558-201ENST00000569422 EXOC7Q9UPT5 735 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 DAAM1Q9Y4D1 1078 aa9.41□□□□□ -0.9
LINC00558-201ENST00000569422 EIF3HO15372 352 aaKnown RBP eCLIP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 STK10O94804 968 aaKnown RBP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FAM200BP0CF97 657 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 ZBTB48P10074 688 aaPredicted RBP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 PYGMP11217 842 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 CHRNB2P17787 502 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 CCND2P30279 289 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 PDE6CP51160 858 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 JAK3P52333 1124 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 KRT76Q01546 638 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FSTL1Q12841 308 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 CUL1Q13616 776 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 KRT71Q3SY84 523 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 OTUD6AQ7L8S5 288 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 CCDC105Q8IYK2 499 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 RASGEF1CQ8N431 466 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 UBL4BQ8N7F7 174 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 ZNF564Q8TBZ8 553 aaPredicted RBP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FAM212AQ96EL1 285 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 ATP6V1G3Q96LB4 118 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FAM210AQ96ND0 272 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 NT5C1BQ96P26 610 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 SPOCK3Q9BQ16 436 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 RAB20Q9NX57 234 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 LRRIQ4A6NIV6 560 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 DCDC2CA8MYV0 355 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 EBAG9O00559 213 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 CYP11B1P15538 503 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 NAT1P18440 290 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 ANXA13P27216 316 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 NF2P35240 595 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 PRKCEQ02156 737 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 SLC39A4Q6P5W5 647 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 VSIG10LQ86VR7 867 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 RHOT2Q8IXI1 618 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 MTMR14Q8NCE2 650 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 ZNF280CQ8ND82 737 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FBXL13Q8NEE6 735 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 LRRC45Q96CN5 670 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 ZBTB45Q96K62 511 aaPredicted RBP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FMO2Q99518 471 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 FAM118BQ9BPY3 351 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 POLR3FQ9H1D9 316 aaPredicted RBP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 DNAJC17Q9NVM6 304 aaKnown RBP9.4□□□□□ -0.9
LINC00558-201ENST00000569422 TRPC6Q9Y210 931 aa9.4□□□□□ -0.9
LINC00558-201ENST00000569422 PFASO15067 1338 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 E7EVH7 732 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 NFKBIEO00221 500 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 RTN2O75298 545 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 HSPA9P38646 679 aaKnown RBP9.4□□□□□ -0.91
LINC00558-201ENST00000569422 VPS41P49754 854 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 LIG4P49917 911 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 FMO1Q01740 532 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 TMEM132BQ14DG7 1078 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 TRIP13Q15645 432 aaPredicted RBP9.4□□□□□ -0.91
LINC00558-201ENST00000569422 ZBED3Q96IU2 234 aaPredicted RBP9.4□□□□□ -0.91
LINC00558-201ENST00000569422 FNBP1Q96RU3 617 aa9.4□□□□□ -0.91
LINC00558-201ENST00000569422 JPH1Q9HDC5 661 aaPredicted RBP9.4□□□□□ -0.91
LINC00558-201ENST00000569422 KIAA1522Q9P206 1035 aaPredicted RBP9.4□□□□□ -0.91
LINC00558-201ENST00000569422 NCANO14594 1321 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 GRIN2DO15399 1336 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 COL2A1P02458 1487 aaPredicted RBP9.39□□□□□ -0.91
LINC00558-201ENST00000569422 CES2O00748 559 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 RGS20O76081 388 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 PTPRAP18433 802 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 SLCO1A2P46721 670 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 POLGP54098 1239 aaPredicted RBP9.39□□□□□ -0.91
LINC00558-201ENST00000569422 NCKAP1LP55160 1127 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 ACTR2P61160 394 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 CNTN2Q02246 1040 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 ZNF844Q08AG5 666 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 ALCAMQ13740 583 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 UBAP2Q5T6F2 1119 aaKnown RBP9.39□□□□□ -0.91
LINC00558-201ENST00000569422 SEL1L2Q5TEA6 688 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 JAMLQ86YT9 394 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 FBXO25Q8TCJ0 367 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 NSUN6Q8TEA1 469 aaKnown RBP9.39□□□□□ -0.91
LINC00558-201ENST00000569422 C1orf54Q8WWF1 131 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 IWS1Q96ST2 819 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 PAIP2Q9BPZ3 127 aaKnown RBP9.39□□□□□ -0.91
LINC00558-201ENST00000569422 CCDC113Q9H0I3 377 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 SLITRK6Q9H5Y7 841 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 CNOT8Q9UFF9 292 aaKnown RBP9.39□□□□□ -0.91
LINC00558-201ENST00000569422 SFNP31947 248 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 BAG6P46379 1132 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms