RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TCP11L1Q9NUJ3 509 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 USP21Q9UK80 565 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 SUGT1Q9Y2Z0 365 aa11.56□□□□□ -0.56
CLK3-226ENST00000569406 REXO2Q9Y3B8 237 aaKnown RBP11.56□□□□□ -0.56
CLK3-226ENST00000569406 MATN2O00339 956 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 SUN1O94901 812 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 CDK7P50613 346 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 ATP2C1P98194 919 aaPredicted RBP11.55□□□□□ -0.56
CLK3-226ENST00000569406 E2F2Q14209 437 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 PFKFB3Q16875 520 aaPredicted RBP11.55□□□□□ -0.56
CLK3-226ENST00000569406 FAM196AQ6ZSG2 479 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 ESX1Q8N693 406 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 PBKQ96KB5 322 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 TMEM237Q96Q45 408 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 GIT1Q9Y2X7 761 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 HBS1LQ9Y450 684 aaKnown RBP11.55□□□□□ -0.56
CLK3-226ENST00000569406 XDHP47989 1333 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 GREB1LQ9C091 1923 aaPredicted RBP11.55□□□□□ -0.56
CLK3-226ENST00000569406 TLDC2A0PJX2 215 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 FAM170AA1A519 330 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 TTC34A8MYJ7 566 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 MAP3K7O43318 606 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 GYS1P13807 737 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 CETN2P41208 172 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 NFRKBQ6P4R8 1299 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 SATL1Q86VE3 508 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 MCF2L2Q86YR7 1114 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 FAM13CQ8NE31 585 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 GIPC3Q8TF64 312 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 CASKIN2Q8WXE0 1202 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 ZNF317Q96PQ6 595 aaPredicted RBP11.55□□□□□ -0.56
CLK3-226ENST00000569406 ZNF304Q9HCX3 659 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 CNGB3Q9NQW8 809 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 INTS9Q9NV88 658 aaKnown RBP11.55□□□□□ -0.56
CLK3-226ENST00000569406 CCPG1Q9ULG6 757 aa11.55□□□□□ -0.56
CLK3-226ENST00000569406 A0A1B0GTH6 734 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 KANSL1LA0AUZ9 987 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 H7C1D1 291 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 RASA1P20936 1047 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 NOVP48745 357 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 KCTD19Q17RG1 926 aaPredicted RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 DEPDC1Q5TB30 811 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 VSIG1Q86XK7 387 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 KSR1Q8IVT5 923 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 DDHD1Q8NEL9 900 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 SYMPKQ92797 1274 aaKnown RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 ERP44Q9BS26 406 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 TBCCD1Q9NVR7 557 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 ARPP21Q9UBL0 812 aaPredicted RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 STX8Q9UNK0 236 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 USP15Q9Y4E8 981 aaPredicted RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 HYOU1Q9Y4L1 999 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 SIPA1L1O43166 1804 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 COL11A2P13942 1736 aaPredicted RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 USP17L3A6NCW0 530 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 USP17L4A6NCW7 530 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 DNAJC6O75061 913 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 TMCC2O75069 709 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 ADAM23O75077 832 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 STAM2O75886 525 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 EEF2P13639 858 aaKnown RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 PPP4CP60510 307 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 CNGA3Q16281 694 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 CCDC174Q6PII3 467 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 USP17L1Q7RTZ2 530 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 PHLDB2Q86SQ0 1253 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 GAB3Q8WWW8 586 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 UTP4Q969X6 686 aaKnown RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 CCDC51Q96ER9 411 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 AS3MTQ9HBK9 375 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 HACD3Q9P035 362 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 LZTS1Q9Y250 596 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 EDIL3O43854 480 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 UBL4AP11441 157 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 FOSL1P15407 271 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 KRT2P35908 639 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 TXKP42681 527 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 ZNF132P52740 706 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 PDXDC2PQ6P474 469 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 ARHGAP24Q8N264 748 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 VPS37AQ8NEZ2 397 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 DIS3LQ8TF46 1054 aaKnown RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 STARD8Q92502 1023 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 RUBCNQ92622 972 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 PAGE5Q96GU1 130 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 PLIN2Q99541 437 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 CNOT10Q9H9A5 744 aaKnown RBP11.54□□□□□ -0.56
CLK3-226ENST00000569406 SNX12Q9UMY4 172 aa11.54□□□□□ -0.56
CLK3-226ENST00000569406 PASKQ96RG2 1323 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 RNF225M0QZC1 329 aaPredicted RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 PCYT1AP49585 367 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 PROM2Q8N271 834 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 FITM2Q8N6M3 262 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 C1orf131Q8NDD1 294 aaKnown RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 GJD4Q96KN9 370 aaPredicted RBP11.53□□□□□ -0.56
CLK3-226ENST00000569406 LACRTQ9GZZ8 138 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 TNFRSF10AO00220 468 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 SNX3O60493 162 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 ZBED1O96006 694 aa11.53□□□□□ -0.56
CLK3-226ENST00000569406 LMNAP02545 664 aaKnown RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms