RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 OR10A5Q9H207 317 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 IFT57Q9NWB7 429 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 TRMT1Q9NXH9 659 aaKnown RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 FAM184BQ9ULE4 1060 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 WDR37Q9Y2I8 494 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 ASB1Q9Y576 335 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 PLEKHH2Q8IVE3 1493 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 SCAF11Q99590 1463 aaKnown RBP3.65□□□□□ -1.83
VPS35-208ENST00000568612 KIF21AQ7Z4S6 1674 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 MAP3K1Q13233 1512 aa3.65□□□□□ -1.83
VPS35-208ENST00000568612 PIK3R4Q99570 1358 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 A0A087WUV0 522 aaPredicted RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 TMEM110-MUSTN1A8MSY1 372 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 AHCYL1O43865 530 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ATP6V1G1O75348 118 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MTRF1O75570 445 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 APOL3O95236 402 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MPIG6BO95866 241 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ITGB3P05106 788 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 SLC9A1P19634 815 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 SMARCA1P28370 1054 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ACTN2P35609 894 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MEOX1P50221 254 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MECP2P51608 486 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 STAT5BP51692 787 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 SLC6A3Q01959 620 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MECOMQ03112 1051 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 DDR1Q08345 913 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ADCY1Q08828 1119 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 G3BP1Q13283 466 aaKnown RBP eCLIP3.64□□□□□ -1.83
VPS35-208ENST00000568612 TOP3AQ13472 1001 aaPredicted RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 MOGSQ13724 837 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 SLC4A8Q2Y0W8 1093 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 C4orf46Q504U0 113 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 PARP10Q53GL7 1025 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 PRAMEF9Q5VWM5 478 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 CAVIN1Q6NZI2 390 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 CC2D1AQ6P1N0 951 aaPredicted RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 LRRC31Q6UY01 552 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MICALCLQ6ZW33 695 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 OTOP1Q7RTM1 612 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 LRRTM3Q86VH5 581 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 CIR1Q86X95 450 aaPredicted RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 LRRC49Q8IUZ0 686 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 CCDC65Q8IXS2 484 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 NXPE1Q8N323 547 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 TRIML1Q8N9V2 468 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ATP11CQ8NB49 1132 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 GIMAP8Q8ND71 665 aaPredicted RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 GABPB2Q8TAK5 448 aaPredicted RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 FAM76AQ8TAV0 307 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 NINJ1Q92982 152 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 E2F7Q96AV8 911 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 AJUBAQ96IF1 538 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 RSRC1Q96IZ7 334 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 SCYL1Q96KG9 808 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 NEUROD6Q96NK8 337 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 LMF1Q96S06 567 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MPHOSPH6Q99547 160 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 UTP14AQ9BVJ6 771 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 UBXN6Q9BZV1 441 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 TSGA10Q9BZW7 698 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 KATNBL1Q9H079 304 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 KIAA1683Q9H0B3 1180 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 C12orf65Q9H3J6 166 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 TMEM165Q9HC07 324 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 EXOC1Q9NV70 894 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 SMPD4Q9NXE4 827 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MAP3K20Q9NYL2 800 aaKnown RBP3.64□□□□□ -1.83
VPS35-208ENST00000568612 PPP4R1LQ9P1A2 415 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 B4GALT6Q9UBX8 382 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ST6GALNAC2Q9UJ37 374 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 MAGEL2Q9UJ55 1249 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 FBXO10Q9UK96 956 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 ATP6V0A2Q9Y487 856 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 CECR2Q9BXF3 1484 aa3.64□□□□□ -1.83
VPS35-208ENST00000568612 SOGA1O94964 1423 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CLIP1P30622 1438 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 A0A0G2JNJ9 132 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CCDC194A0A1B0GVG4 234 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 UBA6A0AVT1 1052 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 PABPN1LA6NDY0 278 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 ZNF891A8MT65 544 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 CBX4O00257 560 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 DVL2O14641 736 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ATP8B1O43520 1251 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 MTA2O94776 668 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 PARNO95453 639 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 FESP07332 822 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ENPP1P22413 925 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 PTX3P26022 381 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 APEX1P27695 318 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 ETV4P43268 484 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 EPHB4P54760 987 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 HDAC4P56524 1084 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SLC8A3P57103 927 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ALDH6A1Q02252 535 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 ROM1Q03395 351 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 MAP3K12Q12852 859 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 MPP3Q13368 585 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms