RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GDAQ9Y2T3 454 aa16.52■□□□□ 0.24
VPS39-210ENST00000568357 PLXNA4Q9HCM2 1894 aa16.52■□□□□ 0.23
VPS39-210ENST00000568357 USP34Q70CQ2 3546 aa16.52■□□□□ 0.23
VPS39-210ENST00000568357 A0A087X0B3 334 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 CARNS1A5YM72 827 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 GRXCR2A6NFK2 248 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 C2orf71A6NGG8 1288 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 F8W810 466 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 ABLIM1O14639 778 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 RECQL4O94761 1208 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 CXCL14O95715 111 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 GLP2RO95838 553 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 ZNF131P52739 623 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 RRAGBQ5VZM2 374 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 HFE2Q6ZVN8 426 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 MYCT1Q8N699 235 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 AUTS2Q8WXX7 1259 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 ZBTB45Q96K62 511 aaPredicted RBP16.51■□□□□ 0.23
VPS39-210ENST00000568357 ZBP1Q9H171 429 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 MARCH5Q9NX47 278 aa16.51■□□□□ 0.23
VPS39-210ENST00000568357 LARSQ9P2J5 1176 aaKnown RBP16.51■□□□□ 0.23
VPS39-210ENST00000568357 DAXXQ9UER7 740 aaPredicted RBP16.51■□□□□ 0.23
VPS39-210ENST00000568357 PRG3Q9Y2Y8 225 aaPredicted RBP16.51■□□□□ 0.23
VPS39-210ENST00000568357 PTGESO14684 152 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 PPP6R2O75170 966 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 KRT18P05783 430 aaKnown RBP16.5■□□□□ 0.23
VPS39-210ENST00000568357 PROZP22891 400 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 OR1G1P47890 313 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 NCKAP1LP55160 1127 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 KCNC3Q14003 757 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 SMC1AQ14683 1233 aaKnown RBP16.5■□□□□ 0.23
VPS39-210ENST00000568357 CLUL1Q15846 466 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 DCAF4L1Q3SXM0 396 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 TAS1R1Q7RTX1 841 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 HAUS6Q7Z4H7 955 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 ZBTB33Q86T24 672 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 CEP120Q8N960 986 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 RABGGTAQ92696 567 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 MSLNLQ96KJ4 702 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 CDT1Q9H211 546 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 CACNG4Q9UBN1 327 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 STK17AQ9UEE5 414 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 ZDHHC9Q9Y397 364 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 ZMYM2Q9UBW7 1377 aa16.5■□□□□ 0.23
VPS39-210ENST00000568357 ATG2AQ2TAZ0 1938 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 FAM13AO94988 1023 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 YEATS4O95619 227 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 EFEMP2O95967 443 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 CTSAP10619 480 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 TXLNAP40222 546 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 NDUFV1P49821 464 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 GRIK3Q13003 919 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 STRN3Q13033 797 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 NAB2Q15742 525 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 RPS6KC1Q96S38 1066 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 FIZ1Q96SL8 496 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 CDCA3Q99618 268 aaPredicted RBP16.49■□□□□ 0.23
VPS39-210ENST00000568357 PAAF1Q9BRP4 392 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 TCHPQ9BT92 498 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 ZHX3Q9H4I2 956 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 PARVGQ9HBI0 331 aa16.49■□□□□ 0.23
VPS39-210ENST00000568357 BARX2Q9UMQ3 279 aaPredicted RBP16.49■□□□□ 0.23
VPS39-210ENST00000568357 MYMKA6NI61 221 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 TRAK2O60296 914 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 CLASP2O75122 1294 aaKnown RBP16.48■□□□□ 0.23
VPS39-210ENST00000568357 BRD1O95696 1058 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 GRM5P41594 1212 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 OSTNP61366 133 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 PUS10Q3MIT2 529 aaKnown RBP16.48■□□□□ 0.23
VPS39-210ENST00000568357 ZNF568Q3ZCX4 644 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 AXDND1Q5T1B0 1012 aaPredicted RBP16.48■□□□□ 0.23
VPS39-210ENST00000568357 SHC4Q6S5L8 630 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 MPZL3Q6UWV2 235 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 TMEM184AQ6ZMB5 413 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 CCDC73Q6ZRK6 1079 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 SV2BQ7L1I2 683 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 DYMQ7RTS9 669 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 PDILTQ8N807 584 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 PRSS33Q8NF86 280 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 KCNN1Q92952 543 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 COLEC11Q9BWP8 271 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 IRAK3Q9Y616 596 aa16.48■□□□□ 0.23
VPS39-210ENST00000568357 MEFVO15553 781 aaPredicted RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 LILRB3O75022 631 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 TBCAO75347 108 aaKnown RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 NR1I2O75469 434 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 TOM1L1O75674 476 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 THP07101 528 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 MCF2P10911 925 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 NMT1P30419 496 aaKnown RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 CA8P35219 290 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 DNM1Q05193 864 aaKnown RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 ZP2Q05996 745 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 COASYQ13057 564 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 TUSC3Q13454 348 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 BMS1Q14692 1282 aaKnown RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 PTPN14Q15678 1187 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 LLGL2Q6P1M3 1020 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 ALKAL1Q6UXT8 129 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 ZPBP2Q6X784 338 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms