RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ZPBP2Q6X784 338 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 TMEM161BQ8NDZ6 487 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 LARP4BQ92615 738 aaKnown RBP20.54■□□□□ 0.88
CLN3-227ENST00000567495 ZNF396Q96N95 335 aaPredicted RBP20.54■□□□□ 0.88
CLN3-227ENST00000567495 HERC2P3Q9BVR0 1158 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 CCDC94Q9BW85 323 aaPredicted RBP20.54■□□□□ 0.88
CLN3-227ENST00000567495 VN1R3Q9BXE9 311 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 TOPORSQ9NS56 1045 aaPredicted RBP20.54■□□□□ 0.88
CLN3-227ENST00000567495 MARCH5Q9NX47 278 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 STK17AQ9UEE5 414 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 PLXNA4Q9HCM2 1894 aa20.54■□□□□ 0.88
CLN3-227ENST00000567495 KRT18P05783 430 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 MAPTP10636 758 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 MCF2P10911 925 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 GRM5P41594 1212 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 YARSP54577 528 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 CEBPZQ03701 1054 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 ZNF568Q3ZCX4 644 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 FAM173BQ6P4H8 233 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 TAS1R3Q7RTX0 852 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 KRI1Q8N9T8 703 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 EPSTI1Q96J88 318 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 USP28Q96RU2 1077 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 REEP2Q9BRK0 252 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 TCHPQ9BT92 498 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 TARS2Q9BW92 718 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 PARVGQ9HBI0 331 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 DZANK1Q9NVP4 752 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 GDAQ9Y2T3 454 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 USP15Q9Y4E8 981 aaPredicted RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 HCFC2Q9Y5Z7 792 aa20.53■□□□□ 0.88
CLN3-227ENST00000567495 TCF20Q9UGU0 1960 aaKnown RBP20.53■□□□□ 0.88
CLN3-227ENST00000567495 C19orf67A6NJJ6 358 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 LILRB3O75022 631 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 TOM1L1O75674 476 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 FAM13AO94988 1023 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 EFEMP2O95967 443 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 PROZP22891 400 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 NASPP49321 788 aaPredicted RBP20.52■□□□□ 0.88
CLN3-227ENST00000567495 ZNF131P52739 623 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 RBM10P98175 930 aaKnown RBP20.52■□□□□ 0.88
CLN3-227ENST00000567495 KIAA1841Q6NSI8 718 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 LLGL2Q6P1M3 1020 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 MPZL3Q6UWV2 235 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 RNF168Q8IYW5 571 aaPredicted RBP20.52■□□□□ 0.88
CLN3-227ENST00000567495 AUTS2Q8WXX7 1259 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 C1QTNF1Q9BXJ1 281 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 CDT1Q9H211 546 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 ADAM28Q9UKQ2 775 aa20.52■□□□□ 0.88
CLN3-227ENST00000567495 PTGESO14684 152 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 TBCAO75347 108 aaKnown RBP20.51■□□□□ 0.87
CLN3-227ENST00000567495 TADA2AO75478 443 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 GLUD2P49448 558 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 NCKAP1LP55160 1127 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 DSG1Q02413 1049 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 ITIH3Q06033 890 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 DHX8Q14562 1220 aaKnown RBP20.51■□□□□ 0.87
CLN3-227ENST00000567495 MCM6Q14566 821 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 HSP90AA2PQ14568 343 aaPredicted RBP20.51■□□□□ 0.87
CLN3-227ENST00000567495 RRAGBQ5VZM2 374 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 SYCE2Q6PIF2 218 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 CCDC73Q6ZRK6 1079 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 MYCT1Q8N699 235 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 SUSD6Q92537 303 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 S1PR5Q9H228 398 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 CD320Q9NPF0 282 aa20.51■□□□□ 0.87
CLN3-227ENST00000567495 SF3B1O75533 1304 aaKnown RBP eCLIP20.51■□□□□ 0.873e-9■■■■■ 164.7
CLN3-227ENST00000567495 NPHP3-ACAD11A0A0J9YXS1 232 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 C1RP00736 705 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 CREMQ03060 361 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 ELAVL2Q12926 359 aaKnown RBP20.5■□□□□ 0.87
CLN3-227ENST00000567495 STK38Q15208 465 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 USP41Q3LFD5 358 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 CES5AQ6NT32 575 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 FUT10Q6P4F1 479 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 ELMSAN1Q6PJG2 1045 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 USP49Q70CQ1 688 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 HAUS6Q7Z4H7 955 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 SLC22A17Q8WUG5 538 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 ACAP3Q96P50 834 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 KLHL5Q96PQ7 755 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.5■□□□□ 0.87
CLN3-227ENST00000567495 CHST7Q9NS84 486 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 SLC38A7Q9NVC3 462 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 DPP7Q9UHL4 492 aa20.5■□□□□ 0.87
CLN3-227ENST00000567495 ATG2AQ2TAZ0 1938 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 CLDN3O15551 220 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 ADH1AP07327 375 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 CNPP09543 421 aaKnown RBP20.49■□□□□ 0.87
CLN3-227ENST00000567495 KLRC2P26717 231 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 KYAT1Q16773 422 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 XKR4Q5GH76 650 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 SPECC1Q5M775 1068 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 KIAA0319Q5VV43 1072 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 LINC00301Q8NCQ3 95 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 LRRC15Q8TF66 581 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 UROC1Q96N76 676 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 CLIC6Q96NY7 704 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 NECTIN4Q96NY8 510 aa20.49■□□□□ 0.87
CLN3-227ENST00000567495 PHF7Q9BWX1 381 aaPredicted RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms