RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 CCL16O15467 120 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 CDC27P30260 824 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 CCR3P51677 355 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 RTP2Q5QGT7 225 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 PLA2G4FQ68DD2 849 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 NOTUMQ6P988 496 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 PRSS55Q6UWB4 352 aaPredicted RBP18.77■□□□□ 0.6
CDH3-205ENST00000566808 B3GNT9Q6UX72 402 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 HACE1Q8IYU2 909 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 EIF2AQ9BY44 585 aaKnown RBP18.77■□□□□ 0.6
CDH3-205ENST00000566808 LSG1Q9H089 658 aaKnown RBP18.77■□□□□ 0.6
CDH3-205ENST00000566808 RNF39Q9H2S5 420 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 GIT1Q9Y2X7 761 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 HES2Q9Y543 173 aa18.77■□□□□ 0.6
CDH3-205ENST00000566808 SRGAP2CP0DJJ0 459 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 AXLP30530 894 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 USP11P51784 963 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 LAMTOR4Q0VGL1 99 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 GRIK3Q13003 919 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 PABPC1LQ4VXU2 614 aaKnown RBP18.76■□□□□ 0.59
CDH3-205ENST00000566808 EXOC8Q8IYI6 725 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 ZNF687Q8N1G0 1237 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 PRPF31Q8WWY3 499 aaKnown RBP18.76■□□□□ 0.59
CDH3-205ENST00000566808 PIK3R5Q8WYR1 880 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 GJA10Q969M2 543 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 MIOSQ9NXC5 875 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 PPME1Q9Y570 386 aa18.76■□□□□ 0.59
CDH3-205ENST00000566808 SHISA7A6NL88 538 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 MAN2B1O00754 1011 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 TSPAN1O60635 241 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 PSMC5P62195 406 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 PSMD5Q16401 504 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 IL31Q6EBC2 164 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.75■□□□□ 0.59
CDH3-205ENST00000566808 CCDC148Q8NFR7 591 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 SLC7A14Q8TBB6 771 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 CLSTN3Q9BQT9 956 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 TTPALQ9BTX7 342 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 DHX33Q9H6R0 707 aaKnown RBP18.75■□□□□ 0.59
CDH3-205ENST00000566808 GDE1Q9NZC3 331 aa18.75■□□□□ 0.59
CDH3-205ENST00000566808 NDRG2Q9UN36 371 aaKnown RBP18.75■□□□□ 0.59
CDH3-205ENST00000566808 LAMA1P25391 3075 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 PDCD11Q14690 1871 aaKnown RBP18.74■□□□□ 0.59
CDH3-205ENST00000566808 KLF18A0A0U1RQI7 1052 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 EDIL3O43854 480 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 GDF9O60383 454 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 RFC5P40937 340 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 SIM2Q14190 667 aaPredicted RBP18.74■□□□□ 0.59
CDH3-205ENST00000566808 HSP90AA2PQ14568 343 aaPredicted RBP18.74■□□□□ 0.59
CDH3-205ENST00000566808 NECTIN1Q15223 517 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 RNF149Q8NC42 400 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 ING5Q8WYH8 240 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 TMEM143Q96AN5 459 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 APOL6Q9BWW8 343 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 TRIM6Q9C030 488 aaPredicted RBP18.74■□□□□ 0.59
CDH3-205ENST00000566808 CSRNP2Q9H175 543 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 NXF3Q9H4D5 531 aaKnown RBP18.74■□□□□ 0.59
CDH3-205ENST00000566808 HCFC1R1Q9NWW0 138 aa18.74■□□□□ 0.59
CDH3-205ENST00000566808 CCDC196A0A1B0GTZ2 297 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 TADA2AO75478 443 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 LIMK1P53667 647 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 NPEPPSP55786 919 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 NCBP1Q09161 790 aaKnown RBP18.73■□□□□ 0.59
CDH3-205ENST00000566808 ACAP1Q15027 740 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 Q4G0T1 1027 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 PDXDC1Q6P996 788 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 RTL10Q7L3V2 364 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 GSTCDQ8NEC7 633 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 TCP11Q8WWU5 503 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 ELSPBP1Q96BH3 223 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 TCEANC2Q96MN5 208 aa18.73■□□□□ 0.59
CDH3-205ENST00000566808 SH2B1Q9NRF2 756 aaPredicted RBP18.73■□□□□ 0.59
CDH3-205ENST00000566808 MRPS23Q9Y3D9 190 aaKnown RBP18.73■□□□□ 0.59
CDH3-205ENST00000566808 DSPP15924 2871 aaKnown RBP18.72■□□□□ 0.59
CDH3-205ENST00000566808 SDK1Q7Z5N4 2213 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 ASAP2O43150 1006 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 DKC1O60832 514 aaKnown RBP eCLIP18.72■□□□□ 0.59
CDH3-205ENST00000566808 PROS1P07225 676 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 CNR2P34972 360 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 UVSSAQ2YD98 709 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 AXDND1Q5T1B0 1012 aaPredicted RBP18.72■□□□□ 0.59
CDH3-205ENST00000566808 N4BP2L1Q5TBK1 243 aaPredicted RBP18.72■□□□□ 0.59
CDH3-205ENST00000566808 FERMT3Q86UX7 667 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 LNX1Q8TBB1 728 aaPredicted RBP18.72■□□□□ 0.59
CDH3-205ENST00000566808 RABGGTAQ92696 567 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 CEP170P1Q96L14 293 aa18.72■□□□□ 0.59
CDH3-205ENST00000566808 DNMT3BQ9UBC3 853 aaKnown RBP18.72■□□□□ 0.59
CDH3-205ENST00000566808 NID2Q14112 1375 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 ADD1P35611 737 aaKnown RBP18.71■□□□□ 0.59
CDH3-205ENST00000566808 QARSP47897 775 aaKnown RBP18.71■□□□□ 0.59
CDH3-205ENST00000566808 EXOSC10Q01780 885 aaKnown RBP18.71■□□□□ 0.59
CDH3-205ENST00000566808 EMC2Q15006 297 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 RNF20Q5VTR2 975 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 FAM171A1Q5VUB5 890 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 DHX32Q7L7V1 743 aaKnown RBP18.71■□□□□ 0.59
CDH3-205ENST00000566808 ETNPPLQ8TBG4 499 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 CPB2Q96IY4 423 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 PLA2G2FQ9BZM2 168 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 BRD9Q9H8M2 597 aa18.71■□□□□ 0.59
CDH3-205ENST00000566808 AVENQ9NQS1 362 aaPredicted RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms