RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 FBXO2Q9UK22 296 aaPredicted RBP20.21■□□□□ 0.83
CLN3-221ENST00000566057 RBM19Q9Y4C8 960 aaKnown RBP20.21■□□□□ 0.83
CLN3-221ENST00000566057 MTCL1Q9Y4B5 1905 aaKnown RBP20.21■□□□□ 0.83
CLN3-221ENST00000566057 SOD2P04179 222 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 SRGAP2BP0DMP2 458 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 EPCAMP16422 314 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 MCM6Q14566 821 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 NAB2Q15742 525 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 GPBP1Q86WP2 473 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 RNF168Q8IYW5 571 aaPredicted RBP20.2■□□□□ 0.82
CLN3-221ENST00000566057 TMEM161BQ8NDZ6 487 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 SPIRE2Q8WWL2 714 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 CASP10Q92851 521 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 KLHL5Q96PQ7 755 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 COLEC11Q9BWP8 271 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 STK39Q9UEW8 545 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 CDH22Q9UJ99 828 aa20.2■□□□□ 0.82
CLN3-221ENST00000566057 PI4K2BG5E9Z4 385 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 C2CD2LO14523 706 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 NR1I2O75469 434 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 CNPP09543 421 aaKnown RBP20.19■□□□□ 0.82
CLN3-221ENST00000566057 CEP120Q8N960 986 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 TMEM87AQ8NBN3 555 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 RAD54LQ92698 747 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 ZBTB45Q96K62 511 aaPredicted RBP20.19■□□□□ 0.82
CLN3-221ENST00000566057 CLIC6Q96NY7 704 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 USP28Q96RU2 1077 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 REEP2Q9BRK0 252 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 HERC2P3Q9BVR0 1158 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 MRPL4Q9BYD3 311 aaKnown RBP20.19■□□□□ 0.82
CLN3-221ENST00000566057 GPR62Q9BZJ7 368 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 CCSER1Q9C0I3 900 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 CDT1Q9H211 546 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 MRPL17Q9NRX2 175 aaKnown RBP20.19■□□□□ 0.82
CLN3-221ENST00000566057 SRPRBQ9Y5M8 271 aaKnown RBP20.19■□□□□ 0.82
CLN3-221ENST00000566057 PDCD11Q14690 1871 aaKnown RBP20.19■□□□□ 0.82
CLN3-221ENST00000566057 VWA8A3KMH1 1905 aa20.19■□□□□ 0.82
CLN3-221ENST00000566057 C2orf16Q68DN1 1984 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 CASTOR2A6NHX0 329 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 ABLIM1O14639 778 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 THP07101 528 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 MAPTP10636 758 aaKnown RBP20.18■□□□□ 0.82
CLN3-221ENST00000566057 HOXB8P17481 243 aaPredicted RBP20.18■□□□□ 0.82
CLN3-221ENST00000566057 PROZP22891 400 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 TUSC3Q13454 348 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 KIAA0319Q5VV43 1072 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 KANK3Q6NY19 840 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 ZBTB33Q86T24 672 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 C12orf76Q8N812 135 aaPredicted RBP20.18■□□□□ 0.82
CLN3-221ENST00000566057 B3GALT6Q96L58 329 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 ZSCAN16Q9H4T2 348 aaPredicted RBP20.18■□□□□ 0.82
CLN3-221ENST00000566057 MYO10Q9HD67 2058 aa20.18■□□□□ 0.82
CLN3-221ENST00000566057 URODP06132 367 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 KLRC2P26717 231 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 CLCN4P51793 760 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 SMTNP53814 917 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 OSTNP61366 133 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 HSP90AA2PQ14568 343 aaPredicted RBP20.17■□□□□ 0.82
CLN3-221ENST00000566057 ZNF568Q3ZCX4 644 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 FUT10Q6P4F1 479 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 RASSF8Q8NHQ8 419 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 FEZF2Q8TBJ5 459 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 POP1Q99575 1024 aaKnown RBP20.17■□□□□ 0.82
CLN3-221ENST00000566057 PHF7Q9BWX1 381 aaPredicted RBP20.17■□□□□ 0.82
CLN3-221ENST00000566057 EMILIN2Q9BXX0 1053 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 CHST7Q9NS84 486 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 ADAM28Q9UKQ2 775 aa20.17■□□□□ 0.82
CLN3-221ENST00000566057 LOC730098B7Z3J9 87 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 TADA2AO75478 443 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 IGFBP6P24592 240 aaPredicted RBP20.16■□□□□ 0.82
CLN3-221ENST00000566057 DDIT3P35638 169 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 GRM5P41594 1212 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 NCKAP1LP55160 1127 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 DSG1Q02413 1049 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 CBX2Q14781 532 aaPredicted RBP20.16■□□□□ 0.82
CLN3-221ENST00000566057 SLC39A14Q15043 492 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 TPRNQ4KMQ1 711 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 GLRA4Q5JXX5 417 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 MPZL3Q6UWV2 235 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 ALKAL1Q6UXT8 129 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 APBB1IPQ7Z5R6 666 aaPredicted RBP20.16■□□□□ 0.82
CLN3-221ENST00000566057 HSCBQ8IWL3 235 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 HASPINQ8TF76 798 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 LARP4BQ92615 738 aaKnown RBP20.16■□□□□ 0.82
CLN3-221ENST00000566057 PPP1R10Q96QC0 940 aaKnown RBP20.16■□□□□ 0.82
CLN3-221ENST00000566057 TCHPQ9BT92 498 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 DAXXQ9UER7 740 aaPredicted RBP20.16■□□□□ 0.82
CLN3-221ENST00000566057 KCNG1Q9UIX4 513 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 ODF2LQ9ULJ1 636 aa20.16■□□□□ 0.82
CLN3-221ENST00000566057 KIF4AO95239 1232 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 BRD1O95696 1058 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 WEE2P0C1S8 567 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 MCF2P10911 925 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 GLUD2P49448 558 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 STRN3Q13033 797 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 RARS2Q5T160 578 aaKnown RBP20.15■□□□□ 0.82
CLN3-221ENST00000566057 HAUS6Q7Z4H7 955 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 PPFIBP1Q86W92 1011 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 RPGRIP1Q96KN7 1286 aa20.15■□□□□ 0.82
CLN3-221ENST00000566057 C1QTNF1Q9BXJ1 281 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms