RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 BSNDQ8WZ55 320 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 STAMQ92783 540 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 KIFAP3Q92845 792 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 IFT74Q96LB3 600 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 RAB34Q9BZG1 259 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 CCDC113Q9H0I3 377 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 LRWD1Q9UFC0 647 aa20.67■□□□□ 0.9
CLN3-218ENST00000565688 SF3B1O75533 1304 aaKnown RBP eCLIP20.67■□□□□ 0.93e-9■■■■■ 164.7
CLN3-218ENST00000565688 PDGFBP01127 241 aaPredicted RBP20.66■□□□□ 0.9
CLN3-218ENST00000565688 U2AF2P26368 475 aaKnown RBP eCLIP20.66■□□□□ 0.9
CLN3-218ENST00000565688 C4orf32Q8N8J7 132 aa20.66■□□□□ 0.9
CLN3-218ENST00000565688 FEZF2Q8TBJ5 459 aa20.66■□□□□ 0.9
CLN3-218ENST00000565688 RIN2Q8WYP3 895 aaPredicted RBP20.66■□□□□ 0.9
CLN3-218ENST00000565688 WDR6Q9NNW5 1121 aaKnown RBP20.66■□□□□ 0.9
CLN3-218ENST00000565688 CACNA1HO95180 2353 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 PAPLNO95428 1278 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 THP07101 528 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 TDGQ13569 410 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 DCAF4L1Q3SXM0 396 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 APBB1IPQ7Z5R6 666 aaPredicted RBP20.65■□□□□ 0.9
CLN3-218ENST00000565688 PALB2Q86YC2 1186 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 B3GALT6Q96L58 329 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 BHMT2Q9H2M3 363 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 SMOC2Q9H3U7 446 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 ZDHHC7Q9NXF8 308 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 SNTG2Q9NY99 539 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 IGSF9Q9P2J2 1179 aa20.65■□□□□ 0.9
CLN3-218ENST00000565688 CLUHO75153 1309 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 TTLL13PA6NNM8 815 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 LAD1O00515 517 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 TGM5O43548 720 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 RECQL4O94761 1208 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 LIG1P18858 919 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 SMG7Q92540 1137 aaKnown RBP20.64■□□□□ 0.89
CLN3-218ENST00000565688 RABGGTAQ92696 567 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 KIF2CQ99661 725 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 MFSD1Q9H3U5 465 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 KCNK12Q9HB15 430 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 KIAA1024Q9UPX6 916 aa20.64■□□□□ 0.89
CLN3-218ENST00000565688 C2orf16Q68DN1 1984 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 PLXNA3P51805 1871 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 CASTOR2A6NHX0 329 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 PTGESO14684 152 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 RFPL2O75678 378 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 SPATA31D3P0C874 917 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 ELAVL2Q12926 359 aaKnown RBP20.63■□□□□ 0.89
CLN3-218ENST00000565688 PTGDRQ13258 359 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 ECM1Q16610 540 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 ASTLQ6HA08 431 aaPredicted RBP20.63■□□□□ 0.89
CLN3-218ENST00000565688 LILRA6Q6PI73 481 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 SPATA31D4Q6ZUB0 917 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 IGSF22Q8N9C0 903 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 PAAF1Q9BRP4 392 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 TTPALQ9BTX7 342 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 NT5C3AQ9H0P0 336 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 PIDD1Q9HB75 910 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 DDX19AQ9NUU7 478 aaKnown RBP20.63■□□□□ 0.89
CLN3-218ENST00000565688 KIF3AQ9Y496 699 aa20.63■□□□□ 0.89
CLN3-218ENST00000565688 GALR2O43603 387 aaPredicted RBP20.62■□□□□ 0.89
CLN3-218ENST00000565688 KIF4AO95239 1232 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 GBP2P32456 591 aaPredicted RBP20.62■□□□□ 0.89
CLN3-218ENST00000565688 CLCN5P51795 746 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 NBR1Q14596 966 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 ATF7IP2Q5U623 682 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 PDXDC1Q6P996 788 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 SNX29Q8TEQ0 813 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 ZNF707Q96C28 371 aaPredicted RBP20.62■□□□□ 0.89
CLN3-218ENST00000565688 EPS15L1Q9UBC2 864 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 DUSP12Q9UNI6 340 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 DNM3Q9UQ16 869 aa20.62■□□□□ 0.89
CLN3-218ENST00000565688 PHLPP2Q6ZVD8 1323 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 K7ERI5 159 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 RPL17P18621 184 aaKnown RBP20.61■□□□□ 0.89
CLN3-218ENST00000565688 TOB1P50616 345 aaPredicted RBP20.61■□□□□ 0.89
CLN3-218ENST00000565688 NAB2Q15742 525 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 RTP2Q5QGT7 225 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 FAM171A1Q5VUB5 890 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 KRT79Q5XKE5 535 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 EEF1DP3Q658K8 133 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 GLYCTKQ8IVS8 523 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 PIK3R5Q8WYR1 880 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 ATOH1Q92858 354 aaPredicted RBP20.61■□□□□ 0.89
CLN3-218ENST00000565688 NXPE3Q969Y0 559 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 PHOX2BQ99453 314 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 KIFC3Q9BVG8 833 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 PRKD2Q9BZL6 878 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.61■□□□□ 0.89
CLN3-218ENST00000565688 CACNG4Q9UBN1 327 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 USP20Q9Y2K6 914 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 GDAQ9Y2T3 454 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 PCDHB6Q9Y5E3 794 aa20.61■□□□□ 0.89
CLN3-218ENST00000565688 N4BP1O75113 896 aaKnown RBP20.6■□□□□ 0.89
CLN3-218ENST00000565688 EDN1P05305 212 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 MYBP10242 640 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 PRPHP41219 470 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 NT5DC1Q5TFE4 455 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 PRSS55Q6UWB4 352 aaPredicted RBP20.6■□□□□ 0.89
CLN3-218ENST00000565688 CEP57Q86XR8 500 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 TMEM105Q8N8V8 129 aa20.6■□□□□ 0.89
CLN3-218ENST00000565688 HASPINQ8TF76 798 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms