RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MEFVO15553 781 aaPredicted RBP16.37■□□□□ 0.21
CLN3-213ENST00000565047 IGFBP6P24592 240 aaPredicted RBP16.37■□□□□ 0.21
CLN3-213ENST00000565047 TUSC3Q13454 348 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 DCAF4L1Q3SXM0 396 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 FUT10Q6P4F1 479 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 CD300LGQ6UXG3 332 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 BRAPQ7Z569 592 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 SPIRE2Q8WWL2 714 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 FBXL18Q96ME1 805 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 EMILIN2Q9BXX0 1053 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 BLOC1S4Q9NUP1 217 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 ADAM28Q9UKQ2 775 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 ARIH1Q9Y4X5 557 aaPredicted RBP16.37■□□□□ 0.21
CLN3-213ENST00000565047 PHLPP2Q6ZVD8 1323 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 SLC26A4O43511 780 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 BRD1O95696 1058 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 C1RP00736 705 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 WEE2P0C1S8 567 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 PLA2G4BP0C869 781 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 LIG1P18858 919 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 KLRC2P26717 231 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 CA8P35219 290 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 GLUD2P49448 558 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 PTPAQ15257 358 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 KIAA1841Q6NSI8 718 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 LILRA6Q6PI73 481 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 CEP120Q8N960 986 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 TMEM161BQ8NDZ6 487 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 B3GALT6Q96L58 329 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 DRC1Q96MC2 740 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 NECTIN4Q96NY8 510 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 PPP1R10Q96QC0 940 aaKnown RBP16.36■□□□□ 0.21
CLN3-213ENST00000565047 PLIN2Q99541 437 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 NT5C3AQ9H0P0 336 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 CDT1Q9H211 546 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 SSX2IPQ9Y2D8 614 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 RBM19Q9Y4C8 960 aaKnown RBP16.36■□□□□ 0.21
CLN3-213ENST00000565047 TECTAO75443 2155 aa16.36■□□□□ 0.21
CLN3-213ENST00000565047 CCDC169A6NNP5 214 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 C2CD2LO14523 706 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 NR1I2O75469 434 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 KIF4AO95239 1232 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 URODP06132 367 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 THP07101 528 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 PLS3P13797 630 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 GRM5P41594 1212 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 ZXDAP98168 799 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 DMP1Q13316 513 aaPredicted RBP16.35■□□□□ 0.21
CLN3-213ENST00000565047 HSP90AA2PQ14568 343 aaPredicted RBP16.35■□□□□ 0.21
CLN3-213ENST00000565047 SF3A1Q15459 793 aaKnown RBP16.35■□□□□ 0.21
CLN3-213ENST00000565047 RARS2Q5T160 578 aaKnown RBP16.35■□□□□ 0.21
CLN3-213ENST00000565047 CES5AQ6NT32 575 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 GPR149Q86SP6 731 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 CABP7Q86V35 215 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 INTS4Q96HW7 963 aaKnown RBP16.35■□□□□ 0.21
CLN3-213ENST00000565047 ADPGKQ9BRR6 497 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 TARS2Q9BW92 718 aaKnown RBP16.35■□□□□ 0.21
CLN3-213ENST00000565047 KMT5AQ9NQR1 393 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 KCND2Q9NZV8 630 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 FNIP2Q9P278 1114 aa16.35■□□□□ 0.21
CLN3-213ENST00000565047 PLXNA3P51805 1871 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 NPHP3-ACAD11A0A0J9YXS1 232 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 CASTOR2A6NHX0 329 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 TMEM189-UBE2V1I3L0A0 370 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 SLC16A4O15374 487 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 MAPTP10636 758 aaKnown RBP16.34■□□□□ 0.21
CLN3-213ENST00000565047 SYT1P21579 422 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 MTHFRP42898 656 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 RAD51AP2Q09MP3 1159 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 RESTQ13127 1097 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 ZRSR1Q15695 479 aaKnown RBP16.34■□□□□ 0.21
CLN3-213ENST00000565047 USP41Q3LFD5 358 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 RTP2Q5QGT7 225 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 CMASQ8NFW8 434 aaPredicted RBP16.34■□□□□ 0.21
CLN3-213ENST00000565047 MRPL4Q9BYD3 311 aaKnown RBP16.34■□□□□ 0.21
CLN3-213ENST00000565047 RHOBTB2Q9BYZ6 727 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 SFXN1Q9H9B4 322 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 GDAQ9Y2T3 454 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 CLIC4Q9Y696 253 aa16.34■□□□□ 0.21
CLN3-213ENST00000565047 SMIM28A0A1B0GU29 152 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 C2CD4DB7Z1M9 353 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 TADA2AO75478 443 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 BMP15O95972 392 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 LONP1P36776 959 aaKnown RBP16.33■□□□□ 0.2
CLN3-213ENST00000565047 ZNF131P52739 623 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 NCKAP1LP55160 1127 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 SOX4Q06945 474 aaPredicted RBP16.33■□□□□ 0.2
CLN3-213ENST00000565047 ATAT1Q5SQI0 421 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 TMC5Q6UXY8 1006 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 C15orf39Q6ZRI6 1047 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 TRIM67Q6ZTA4 783 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 HFE2Q6ZVN8 426 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 USP49Q70CQ1 688 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 BMP8AQ7Z5Y6 402 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 LNX1Q8TBB1 728 aaPredicted RBP16.33■□□□□ 0.2
CLN3-213ENST00000565047 ASIC4Q96FT7 647 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 ZBTB45Q96K62 511 aaPredicted RBP16.33■□□□□ 0.2
CLN3-213ENST00000565047 RIPOR3Q96MK2 946 aa16.33■□□□□ 0.2
CLN3-213ENST00000565047 ZMAT2Q96NC0 199 aaKnown RBP16.33■□□□□ 0.2
CLN3-213ENST00000565047 FIZ1Q96SL8 496 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms