RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 PDE11AQ9HCR9 933 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 RBAKQ9NYW8 714 aaPredicted RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.04□□□□□ -0.641e-6■■■□□ 15.2
SMG1-208ENST00000563448 TET1Q8NFU7 2136 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 DNAH12Q6ZR08 3092 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 GTPBP10A4D1E9 387 aaKnown RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 RNF225M0QZC1 329 aaPredicted RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 CAND2O75155 1236 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 RPS6KA5O75582 802 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 NPTXRO95502 500 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 GYPCP04921 128 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 COL6A1P12109 1028 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 CKBP12277 381 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 GCLMP48507 274 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 OSTNP61366 133 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 RBL2Q08999 1139 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 NCBP1Q09161 790 aaKnown RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 HSP90AA2PQ14568 343 aaPredicted RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 DPY19L2P1Q6NXN4 242 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 NOTUMQ6P988 496 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 TRAF7Q6Q0C0 670 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 SLC39A5Q6ZMH5 540 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 BRSK2Q8IWQ3 736 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 DIS3LQ8TF46 1054 aaKnown RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 ZNF516Q92618 1163 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 CRACR2AQ9BSW2 395 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 EIF2AQ9BY44 585 aaKnown RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 TTYH3Q9C0H2 523 aa11.04□□□□□ -0.64
SMG1-208ENST00000563448 TOPORSQ9NS56 1045 aaPredicted RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 KIAA0100Q14667 2235 aaKnown RBP11.04□□□□□ -0.64
SMG1-208ENST00000563448 PTPRJQ12913 1337 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 TULP1O00294 542 aaPredicted RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 MEFVO15553 781 aaPredicted RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 DLATP10515 647 aaKnown RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 SLC9A1P19634 815 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 CASP14P31944 242 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 ATN1P54259 1190 aaPredicted RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 CLDN10P78369 228 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 DCAF4L1Q3SXM0 396 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 FBXO47Q5MNV8 452 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 UBXN11Q5T124 520 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 SLC27A1Q6PCB7 646 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 CPLX3Q8WVH0 158 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 FAM84AQ96KN4 292 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 PCMTD1Q96MG8 357 aaPredicted RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 ADPGKQ9BRR6 497 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 LSM14BQ9BX40 385 aaKnown RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 TMEM117Q9H0C3 514 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 AGO3Q9H9G7 860 aaKnown RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 ST3GAL5Q9UNP4 418 aa11.03□□□□□ -0.64
SMG1-208ENST00000563448 PIN4Q9Y237 131 aaKnown RBP11.03□□□□□ -0.64
SMG1-208ENST00000563448 EPHB6O15197 1021 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 NOL4O94818 638 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 STAG3L1P0CL83 205 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 PON1P27169 355 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 FXR1P51114 621 aaKnown RBP eCLIP11.02□□□□□ -0.644e-6■■■□□ 17.7
SMG1-208ENST00000563448 ADKP55263 362 aaKnown RBP11.02□□□□□ -0.64
SMG1-208ENST00000563448 GSDMDP57764 484 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 MYL7Q01449 175 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 APBA1Q02410 837 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 LPIN1Q14693 890 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 ENOX2Q16206 610 aaKnown RBP11.02□□□□□ -0.64
SMG1-208ENST00000563448 LMBRD2Q68DH5 695 aaPredicted RBP11.02□□□□□ -0.64
SMG1-208ENST00000563448 GBP6Q6ZN66 633 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 ANKLE1Q8NAG6 615 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 ZNF830Q96NB3 372 aaPredicted RBP11.02□□□□□ -0.64
SMG1-208ENST00000563448 CGRRF1Q99675 332 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 NUP58Q9BVL2 599 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 ERVK-5Q9HDB9 667 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 PRDM10Q9NQV6 1147 aa11.02□□□□□ -0.64
SMG1-208ENST00000563448 TTC26A0AVF1 554 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 PMM2O15305 246 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 P4HA2O15460 535 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 STX10O60499 249 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 N4BP1O75113 896 aaKnown RBP11.02□□□□□ -0.65
SMG1-208ENST00000563448 CLTAP09496 248 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 CXCL8P10145 99 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 GHRP10912 638 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 ACTN1P12814 892 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 CD52P31358 61 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 GTF2H1P32780 548 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 GRM5P41594 1212 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 MXI1P50539 228 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 NFX1Q12986 1120 aaKnown RBP11.02□□□□□ -0.65
SMG1-208ENST00000563448 TRIM14Q14142 442 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 EXOC3L4Q17RC7 722 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 EPC2Q52LR7 807 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 FIGNQ5HY92 759 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 C15orf39Q6ZRI6 1047 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 USP37Q86T82 979 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 PPFIBP1Q86W92 1011 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 TC2NQ8N9U0 490 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 NEK11Q8NG66 645 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 LMO3Q8TAP4 145 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 CACTINQ8WUQ7 758 aaKnown RBP11.02□□□□□ -0.65
SMG1-208ENST00000563448 FNBP1Q96RU3 617 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 MCOLN1Q9GZU1 580 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 KCNF1Q9H3M0 494 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 RPF1Q9H9Y2 349 aaKnown RBP11.02□□□□□ -0.65
SMG1-208ENST00000563448 TMEM8AQ9HCN3 771 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms