RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 ACMSDQ8TDX5 336 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 FNIP1Q8TF40 1166 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CHPF2Q9P2E5 772 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 ACTL7BQ9Y614 415 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 ABCB11O95342 1321 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 NOTOA8MTQ0 251 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 TRIM24O15164 1050 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CDH2P19022 906 aaPredicted RBP6.61□□□□□ -1.35
CLK3-212ENST00000563418 NT5C2P49902 561 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CASP5P51878 434 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CDCA2Q69YH5 1023 aaPredicted RBP6.61□□□□□ -1.35
CLK3-212ENST00000563418 PRPF39Q86UA1 669 aaKnown RBP6.61□□□□□ -1.35
CLK3-212ENST00000563418 BACH1O14867 736 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CFLARO15519 480 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 ZBED1O96006 694 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 ZNF846Q147U1 533 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CLEC4GQ6UXB4 293 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 RBM44Q6ZP01 1051 aaKnown RBP6.61□□□□□ -1.35
CLK3-212ENST00000563418 RFFLQ8WZ73 363 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 C19orf60Q96EN9 201 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 CCSER2Q9H7U1 834 aa6.61□□□□□ -1.35
CLK3-212ENST00000563418 ZNF233A6NK53 670 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 GOLGA8MH3BSY2 632 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PDE9AO76083 593 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 KRT20P35900 424 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 CALCRLQ16602 461 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 HADHQ16836 314 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 TBC1D9BQ66K14 1250 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 SIRT2Q8IXJ6 389 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 SAYSD1Q9NPB0 183 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 GAS7O60861 476 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 HSPA4LO95757 839 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 FGFR4P22455 802 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 SNX17Q15036 470 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 AASDHQ4L235 1098 aaPredicted RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 ZNF618Q5T7W0 954 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 BARGINQ6ZT62 677 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ADAT2Q7Z6V5 191 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 DHDDSQ86SQ9 333 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 METTL16Q86W50 562 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 JPH4Q96JJ6 628 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 WBP11Q9Y2W2 641 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 COQ6Q9Y2Z9 468 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 SNX3O60493 162 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 RARGP13631 454 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ZNF24P17028 368 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 DRD4P21917 467 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 KCNMA1Q12791 1236 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 TBX2Q13207 712 aaPredicted RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 ARHGEF6Q15052 776 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 HERC4Q5GLZ8 1057 aaPredicted RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 WAPLQ7Z5K2 1190 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 NOL6Q9H6R4 1146 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 GPAMQ9HCL2 828 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 AMACRQ9UHK6 382 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 YTHDC2Q9H6S0 1430 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 TNKSO95271 1327 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 GNB5O14775 395 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 TEX33O43247 280 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 SRGNP10124 158 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ADAM9Q13443 819 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 NUP93Q8N1F7 819 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 SLC17A8Q8NDX2 589 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 KCNB2Q92953 911 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 CEP44Q9C0F1 390 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 TRIM45Q9H8W5 580 aaPredicted RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 VPS45Q9NRW7 570 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MCM9Q9NXL9 1143 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ANGPT2O15123 496 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 WBP4O75554 376 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 ASLP04424 464 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 IL12AP29459 219 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 NCKAP1LP55160 1127 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 NCALDP61601 193 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PDK3Q15120 406 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 KCTD21Q4G0X4 260 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PHACTR3Q96KR7 559 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 C8orf4Q9NR00 106 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PANK4Q9NVE7 773 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ZNF232Q9UNY5 417 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PLA2R1Q13018 1463 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 DDAH1O94760 285 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 RUNX1T1Q06455 604 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PTGDRQ13258 359 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PPP2R5CQ13362 524 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 DPF2Q92785 391 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 GRIP2Q9C0E4 1043 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MYLK2Q9H1R3 596 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 TRNAU1APQ9NX07 287 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 ADAM22Q9P0K1 906 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PA2G4Q9UQ80 394 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 A0A1W2PP64 1363 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MFN2O95140 757 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MBD4O95243 580 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 LRPAP1P30533 357 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 GFPT1Q06210 699 aaPredicted RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 TFCP2Q12800 502 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ORC2Q13416 577 aaPredicted RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 SLC15A2Q16348 729 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 FIGNQ5HY92 759 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms