RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 DYMQ7RTS9 669 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 BAP1Q92560 729 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 FMO2Q99518 471 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 TRIM51Q9BSJ1 452 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 AMNQ9BXJ7 453 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 TXLNGYQ9BZA5 131 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 SIGLEC16A6NMB1 481 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 KRIT1O00522 736 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 MEIS2O14770 477 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 HNRNPRO43390 633 aaKnown RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 PFDN1O60925 122 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 ECE1P42892 770 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 RPS6KA1Q15418 735 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 HGSNATQ68CP4 663 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 ZC3H18Q86VM9 953 aaKnown RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 FBXO11Q86XK2 927 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 KIAA0895Q8NCT3 520 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 TRPM4Q8TD43 1214 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 EPS8L3Q8TE67 593 aaKnown RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 RAD54LQ92698 747 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 P2RX5Q93086 422 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 RNF25Q96BH1 459 aaPredicted RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 DHTKD1Q96HY7 919 aaPredicted RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 P2RX7Q99572 595 aaKnown RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 DDX50Q9BQ39 737 aaKnown RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 LBHD1Q9BQE6 289 aaPredicted RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 TIPINQ9BVW5 301 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 CARD9Q9H257 536 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 LRCH1Q9Y2L9 728 aa14.23□□□□□ -0.13
CLK3-206ENST00000562078 NOC2LQ9Y3T9 749 aaKnown RBP14.23□□□□□ -0.13
CLK3-206ENST00000562078 CETN3O15182 167 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 EIF4BP23588 611 aaKnown RBP14.22□□□□□ -0.13
CLK3-206ENST00000562078 CCNFP41002 786 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 DEUP1Q05D60 604 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 ECM1Q16610 540 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 TMEM119Q4V9L6 283 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 CNNM4Q6P4Q7 775 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 SESTD1Q86VW0 696 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 CTTNBP2NLQ9P2B4 639 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 PCDHA12Q9UN75 941 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 CCDC169A6NNP5 214 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 O00370 1275 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 TJP3O95049 919 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 CCNE1P24864 410 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 EPS15P42566 896 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 ANGEL2Q5VTE6 544 aaKnown RBP14.22□□□□□ -0.13
CLK3-206ENST00000562078 ATP8B4Q8TF62 1192 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 VCX3BQ9H321 246 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 VCX3AQ9NNX9 186 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.22□□□□□ -0.13
CLK3-206ENST00000562078 PRKAG3Q9UGI9 489 aa14.22□□□□□ -0.13
CLK3-206ENST00000562078 DBR1Q9UK59 544 aaKnown RBP14.22□□□□□ -0.13
CLK3-206ENST00000562078 NUDT17P0C025 328 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 TARSP26639 723 aaKnown RBP14.21□□□□□ -0.13
CLK3-206ENST00000562078 SLC29A2Q14542 456 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 PARP6Q2NL67 630 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 DENND2CQ68D51 928 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 ECHDC2Q86YB7 292 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 ACER1Q8TDN7 264 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 NAP1L4Q99733 375 aaKnown RBP14.21□□□□□ -0.13
CLK3-206ENST00000562078 DEFB129Q9H1M3 183 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 CTNNAL1Q9UBT7 734 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 BICDL2A1A5D9 508 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 PGRMC1O00264 195 aaKnown RBP14.21□□□□□ -0.13
CLK3-206ENST00000562078 TBC1D12O60347 775 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 FUT4P22083 530 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 SKIV2L2P42285 1042 aaKnown RBP14.21□□□□□ -0.13
CLK3-206ENST00000562078 PMS2P54278 862 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 ARHGAP4P98171 946 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 AP3B2Q13367 1082 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 KIAA1755Q5JYT7 1200 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 PDXDC1Q6P996 788 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 CEP128Q6ZU80 1094 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 UNC13DQ70J99 1090 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 ARMCX6Q7L4S7 300 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 NEK9Q8TD19 979 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 ACTRT1Q8TDG2 376 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 IQCDQ96DY2 449 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 SPATA16Q9BXB7 569 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 FAM192AQ9GZU8 254 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 DENND2DQ9H6A0 471 aaPredicted RBP14.21□□□□□ -0.13
CLK3-206ENST00000562078 NLRC4Q9NPP4 1024 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 ETNK2Q9NVF9 386 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 HAO1Q9UJM8 370 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 PRR12Q9ULL5 1215 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 UTP11Q9Y3A2 253 aaKnown RBP14.21□□□□□ -0.13
CLK3-206ENST00000562078 USH1CQ9Y6N9 552 aa14.21□□□□□ -0.13
CLK3-206ENST00000562078 POLR2AP24928 1970 aaKnown RBP14.2□□□□□ -0.14
CLK3-206ENST00000562078 RBAK-RBAKDNI3L0D1 243 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 UBTFL6P0CB48 400 aaPredicted RBP14.2□□□□□ -0.14
CLK3-206ENST00000562078 RPL13P26373 211 aaKnown RBP14.2□□□□□ -0.14
CLK3-206ENST00000562078 EPHB2P29323 1055 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 USP11P51784 963 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 CGB2Q6NT52 195 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 SEPT14Q6ZU15 432 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 OTUD6AQ7L8S5 288 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 APOBEC3FQ8IUX4 373 aaKnown RBP14.2□□□□□ -0.14
CLK3-206ENST00000562078 NRG4Q8WWG1 115 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 DDX12PQ92771 950 aa14.2□□□□□ -0.14
CLK3-206ENST00000562078 LRMDAQ9H2I8 198 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms