RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CASP10Q92851 521 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 CLIC6Q96NY7 704 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 USP28Q96RU2 1077 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 TARS2Q9BW92 718 aaKnown RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 ZSCAN16Q9H4T2 348 aaPredicted RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 EPHX3Q9H6B9 360 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 KCND2Q9NZV8 630 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 FBXO2Q9UK22 296 aaPredicted RBP17.21■□□□□ 0.35
VPS39-203ENST00000561797 TNFSF13BQ9Y275 285 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 IRAK3Q9Y616 596 aa17.21■□□□□ 0.35
VPS39-203ENST00000561797 C2orf16Q68DN1 1984 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 VWA8A3KMH1 1905 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 PTGESO14684 152 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 KRT18P05783 430 aaKnown RBP17.2■□□□□ 0.34
VPS39-203ENST00000561797 THP07101 528 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 OSTNP61366 133 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 STRN3Q13033 797 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 TUSC3Q13454 348 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 ZNF568Q3ZCX4 644 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 SYCE2Q6PIF2 218 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 SPRYD3Q8NCJ5 442 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 SPIRE2Q8WWL2 714 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 REEP2Q9BRK0 252 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 NTPCRQ9BSD7 190 aaKnown RBP17.2■□□□□ 0.34
VPS39-203ENST00000561797 TCHPQ9BT92 498 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 HERC2P3Q9BVR0 1158 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 CCSER1Q9C0I3 900 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 CDT1Q9H211 546 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 MRPL17Q9NRX2 175 aaKnown RBP17.2■□□□□ 0.34
VPS39-203ENST00000561797 STK39Q9UEW8 545 aa17.2■□□□□ 0.34
VPS39-203ENST00000561797 SRPRBQ9Y5M8 271 aaKnown RBP17.2■□□□□ 0.34
VPS39-203ENST00000561797 CASTOR2A6NHX0 329 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 SOD2P04179 222 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 URODP06132 367 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 HARSP12081 509 aaKnown RBP17.19■□□□□ 0.34
VPS39-203ENST00000561797 EPCAMP16422 314 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 KLRC2P26717 231 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 CEP120Q8N960 986 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 TMEM161BQ8NDZ6 487 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 ZBTB45Q96K62 511 aaPredicted RBP17.19■□□□□ 0.34
VPS39-203ENST00000561797 KLHL5Q96PQ7 755 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 PAAF1Q9BRP4 392 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 EMILIN2Q9BXX0 1053 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 S1PR5Q9H228 398 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 ZHX3Q9H4I2 956 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 LARSQ9P2J5 1176 aaKnown RBP17.19■□□□□ 0.34
VPS39-203ENST00000561797 CCDC39Q9UFE4 941 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 KCNG1Q9UIX4 513 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 BDP1A6H8Y1 2624 aa17.19■□□□□ 0.34
VPS39-203ENST00000561797 C19orf67A6NJJ6 358 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 TADA2AO75478 443 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 FAM13AO94988 1023 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 CNPP09543 421 aaKnown RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 MAPTP10636 758 aaKnown RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 HOXB8P17481 243 aaPredicted RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 GLUD2P49448 558 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 SLC39A14Q15043 492 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 GLRA4Q5JXX5 417 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 KIAA1841Q6NSI8 718 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 FUT10Q6P4F1 479 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 MPZL3Q6UWV2 235 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 MYCT1Q8N699 235 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 C12orf76Q8N812 135 aaPredicted RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 HASPINQ8TF76 798 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 SLC22A17Q8WUG5 538 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 LARP4BQ92615 738 aaKnown RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 B3GALT6Q96L58 329 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 POP1Q99575 1024 aaKnown RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 CCDC94Q9BW85 323 aaPredicted RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 GPR62Q9BZJ7 368 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 PTPRHQ9HD43 1115 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 TFIP11Q9UBB9 837 aaKnown RBP17.18■□□□□ 0.34
VPS39-203ENST00000561797 ADAM28Q9UKQ2 775 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 ODF2LQ9ULJ1 636 aa17.18■□□□□ 0.34
VPS39-203ENST00000561797 LILRB3O75022 631 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 EFEMP2O95967 443 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 DDIT3P35638 169 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 GRM5P41594 1212 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 MATR3P43243 847 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS39-203ENST00000561797 YARSP54577 528 aaKnown RBP17.17■□□□□ 0.34
VPS39-203ENST00000561797 HSP90AA2PQ14568 343 aaPredicted RBP17.17■□□□□ 0.34
VPS39-203ENST00000561797 STK38Q15208 465 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 TPRNQ4KMQ1 711 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 RARS2Q5T160 578 aaKnown RBP17.17■□□□□ 0.34
VPS39-203ENST00000561797 KANK3Q6NY19 840 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 HAUS6Q7Z4H7 955 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 PPFIBP1Q86W92 1011 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 RNF168Q8IYW5 571 aaPredicted RBP17.17■□□□□ 0.34
VPS39-203ENST00000561797 ANKFY1Q9P2R3 1169 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 CDH22Q9UJ99 828 aa17.17■□□□□ 0.34
VPS39-203ENST00000561797 ANK1P16157 1881 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 SPDYE4A6NLX3 237 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 MCF2P10911 925 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 PROZP22891 400 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 TXLNAP40222 546 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 NCKAP1LP55160 1127 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 NAB2Q15742 525 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 SEZ6Q53EL9 994 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 KIAA0319Q5VV43 1072 aa17.16■□□□□ 0.34
VPS39-203ENST00000561797 RRAGBQ5VZM2 374 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms