RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CCP110O43303 1012 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 NDUFA10O95299 355 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 SV2AQ7L0J3 742 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 ZNF410Q86VK4 478 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 ZNF516Q92618 1163 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 CPB2Q96IY4 423 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 CDHR5Q9HBB8 845 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 APEX2Q9UBZ4 518 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 TNFSF13BQ9Y275 285 aa23.06■■□□□ 1.28
CLN3-209ENST00000561689 PMM2O15305 246 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 GPR32O75388 356 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 TNNI1P19237 187 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 FGFR4P22455 802 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 ENOX2Q16206 610 aaKnown RBP23.05■■□□□ 1.28
CLN3-209ENST00000561689 MAP3K21Q5TCX8 1036 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 PHLDB3Q6NSJ2 640 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 SYN2Q92777 582 aaPredicted RBP23.05■■□□□ 1.28
CLN3-209ENST00000561689 SEMA4DQ92854 862 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 TSKSQ9UJT2 592 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 DNAJC12Q9UKB3 198 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 A0A0U1RQJ8 604 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 OGTO15294 1046 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 GNRH1P01148 92 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 GTF2H1P32780 548 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 ENPEPQ07075 957 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 HSP90AA2PQ14568 343 aaPredicted RBP23.05■■□□□ 1.28
CLN3-209ENST00000561689 PTPN14Q15678 1187 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 NBPF20Q3BBV1 942 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 NYAP1Q6ZVC0 841 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 THNSL1Q8IYQ7 743 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 TAS1R2Q8TE23 839 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 ATRIPQ8WXE1 791 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 CCDC42Q96M95 316 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 CNTNAP2Q9UHC6 1331 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 CASP8AP2Q9UKL3 1982 aa23.05■■□□□ 1.28
CLN3-209ENST00000561689 PTPRJQ12913 1337 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 RBAK-RBAKDNI3L0D1 243 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 PNMA6AP0CW24 399 aaPredicted RBP23.04■■□□□ 1.28
CLN3-209ENST00000561689 ARF4P18085 180 aaPredicted RBP23.04■■□□□ 1.28
CLN3-209ENST00000561689 EIF4A3P38919 411 aaKnown RBP23.04■■□□□ 1.28
CLN3-209ENST00000561689 OSTNP61366 133 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 NKX3-2P78367 333 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 CLDN10P78369 228 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 KCNA10Q16322 511 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 HGSNATQ68CP4 663 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 CEP120Q8N960 986 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 OSMRQ99650 979 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 CDT1Q9H211 546 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 AIPL1Q9NZN9 384 aa23.04■■□□□ 1.28
CLN3-209ENST00000561689 KAT6AQ92794 2004 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 GNAT1P11488 350 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 HOXC8P31273 242 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 JAM2P57087 298 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 ASIC2Q16515 512 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 SRGAP1Q7Z6B7 1085 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 CCDC170Q8IYT3 715 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 PXYLP1Q8TE99 480 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 PRIMPOLQ96LW4 560 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 REXO2Q9Y3B8 237 aaKnown RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 BRCA2P51587 3418 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 TSPAN1O60635 241 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 ERLIN2O94905 339 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 ASGR1P07306 291 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 TNNT1P13805 278 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 CYLC1P35663 651 aaPredicted RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 SLC9C1Q4G0N8 1177 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 TDRD12Q587J7 1177 aaKnown RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 ARHGEF19Q8IW93 802 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 BRSK2Q8IWQ3 736 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 FAM212AQ96EL1 285 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 GCOM2Q9BZD3 368 aaPredicted RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 DEF6Q9H4E7 631 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 PDZD7Q9H5P4 517 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 UBE2TQ9NPD8 197 aaPredicted RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 SAGE1Q9NXZ1 904 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 DDX20Q9UHI6 824 aaKnown RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 CPSF3Q9UKF6 684 aaKnown RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 COQ4Q9Y3A0 265 aa23.03■■□□□ 1.28
CLN3-209ENST00000561689 R3HCC1Q9Y3T6 440 aaKnown RBP23.03■■□□□ 1.28
CLN3-209ENST00000561689 SERPING1P05155 500 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 CDC42EP1Q00587 391 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 FBXL13Q8NEE6 735 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 KLHDC9Q8NEP7 349 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 ELMO3Q96BJ8 720 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 STK33Q9BYT3 514 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 RAB20Q9NX57 234 aa23.02■■□□□ 1.28
CLN3-209ENST00000561689 DRAP1Q14919 205 aaPredicted RBP23.01■■□□□ 1.27
CLN3-209ENST00000561689 ARHGAP44Q17R89 818 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 FAM47CQ5HY64 1035 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 C15orf39Q6ZRI6 1047 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 IRF2BP2Q7Z5L9 587 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 LZTFL1Q9NQ48 299 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 MYO6Q9UM54 1294 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 F8VZ95 297 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 INHAP05111 366 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 CYP27A1Q02318 531 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 KLHL30Q0D2K2 578 aa23.01■■□□□ 1.27
CLN3-209ENST00000561689 TDRD10Q5VZ19 366 aaKnown RBP23.01■■□□□ 1.27
CLN3-209ENST00000561689 CCSAPQ6IQ19 270 aaPredicted RBP23.01■■□□□ 1.27
CLN3-209ENST00000561689 TMEM192Q8IY95 271 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms