RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 SH3RF2Q8TEC5 729 aa7.19□□□□□ -1.26
LRRC28-220ENST00000561253 NEUROD6Q96NK8 337 aa7.19□□□□□ -1.26
LRRC28-220ENST00000561253 CD244Q9BZW8 370 aa7.19□□□□□ -1.26
LRRC28-220ENST00000561253 TAF1DQ9H5J8 278 aaPredicted RBP7.19□□□□□ -1.26
LRRC28-220ENST00000561253 DENND2AQ9ULE3 1009 aa7.19□□□□□ -1.26
LRRC28-220ENST00000561253 MAN2B1O00754 1011 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 PDE1AP54750 535 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 DSG1Q02413 1049 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 FIGNQ5HY92 759 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 ANKRD45Q5TZF3 282 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 TSHZ3Q63HK5 1081 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 KCTD1Q719H9 257 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 OTOP1Q7RTM1 612 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 RBM12BQ8IXT5 1001 aaKnown RBP7.18□□□□□ -1.26
LRRC28-220ENST00000561253 WDR66Q8TBY9 1149 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 TBC1D22AQ8WUA7 517 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 EDC3Q96F86 508 aaKnown RBP7.18□□□□□ -1.26
LRRC28-220ENST00000561253 TSPAN17Q96FV3 270 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 LIN37Q96GY3 246 aaPredicted RBP7.18□□□□□ -1.26
LRRC28-220ENST00000561253 TTC1Q99614 292 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 MRIQ9BWK5 157 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 FAM126AQ9BYI3 521 aaPredicted RBP7.18□□□□□ -1.26
LRRC28-220ENST00000561253 PIH1D3Q9NQM4 214 aaKnown RBP7.18□□□□□ -1.26
LRRC28-220ENST00000561253 ASH2LQ9UBL3 628 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 PGAP2Q9UHJ9 254 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 ATP8A1Q9Y2Q0 1164 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 PCDHAC2Q9Y5I4 1007 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 HCFC2Q9Y5Z7 792 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 ATP23Q9Y6H3 246 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 GAKO14976 1311 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 MYO3BQ8WXR4 1341 aa7.18□□□□□ -1.26
LRRC28-220ENST00000561253 TCRBV5S2A0A599 114 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 ZNF503-AS2A6NEH8 195 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 HIP1RO75146 1068 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 IFIT2P09913 472 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 VEGFAP15692 232 aaPredicted RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 MMP14P50281 582 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 YBX1P67809 324 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 IRF9Q00978 393 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 CHAF1AQ13111 956 aaPredicted RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 TUSC3Q13454 348 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 CCDC158Q5M9N0 1113 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 APOBEC3HQ6NTF7 200 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 CENPQQ7L2Z9 268 aaPredicted RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 TMC6Q7Z403 805 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 ZNF605Q86T29 641 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 SKAP1Q86WV1 359 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 NSUN4Q96CB9 384 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 YIPF4Q9BSR8 244 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 ZNF552Q9H707 407 aaPredicted RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 IFT22Q9H7X7 185 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 ECHDC1Q9NTX5 307 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 GNL3LQ9NVN8 582 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 THG1LQ9NWX6 298 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 CNOT7Q9UIV1 285 aaKnown RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 HACL1Q9UJ83 578 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 ASTN2O75129 1339 aaPredicted RBP7.17□□□□□ -1.26
LRRC28-220ENST00000561253 TTC41PQ6P2S7 1318 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 SCN4AP35499 1836 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 RFX7Q2KHR2 1363 aa7.17□□□□□ -1.26
LRRC28-220ENST00000561253 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 H7C1D1 291 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 WNT10BO00744 389 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 SCDO00767 359 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 BRINP1O60477 761 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 LTFP02788 710 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 CHGBP05060 677 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 ATP2A2P16615 1042 aaKnown RBP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 POU3F3P20264 500 aaPredicted RBP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 MX1P20591 662 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 EPHX2P34913 555 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 KPNA1P52294 538 aaPredicted RBP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 OCRLQ01968 901 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 TTC39AQ5SRH9 613 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 ADGRA1Q86SQ6 560 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 C11orf74Q86VG3 221 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 DDX42Q86XP3 938 aaKnown RBP eCLIP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 SMC1BQ8NDV3 1235 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 ZNF526Q8TF50 670 aaPredicted RBP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 CHTF18Q8WVB6 975 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 ALG3Q92685 438 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 BOLA2Q9H3K6 86 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 MYOZ2Q9NPC6 264 aa7.16□□□□□ -1.26
LRRC28-220ENST00000561253 ADARB2Q9NS39 739 aaKnown RBP7.16□□□□□ -1.26
LRRC28-220ENST00000561253 HRKO00198 91 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 ZEB2O60315 1214 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 CLASP2O75122 1294 aaKnown RBP7.15□□□□□ -1.26
LRRC28-220ENST00000561253 FKBP9O95302 570 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 GSPT1P15170 499 aaKnown RBP7.15□□□□□ -1.26
LRRC28-220ENST00000561253 CDK11BP21127 795 aaKnown RBP7.15□□□□□ -1.26
LRRC28-220ENST00000561253 VIPR1P32241 457 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 GJA4P35212 333 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 EPHA5P54756 1037 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 RHBDL3P58872 404 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 MECOMQ03112 1051 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 GRIN1Q05586 938 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 ZNF174Q15697 407 aa7.15□□□□□ -1.26
LRRC28-220ENST00000561253 TBC1D10BQ4KMP7 808 aaPredicted RBP7.15□□□□□ -1.26
LRRC28-220ENST00000561253 GORABQ5T7V8 394 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms