RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 IMPDH2P12268 514 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 STAT2P52630 851 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 KIF22Q14807 665 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 LRRC34Q8IZ02 419 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 UBL4BQ8N7F7 174 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 GMCL1P1Q8NEA9 526 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 ZSWIM1Q9BR11 485 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 PIDD1Q9HB75 910 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 STK24Q9Y6E0 443 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 UTRNP46939 3433 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 SIPA1L1O43166 1804 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 CALCAP01258 141 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 BCRP11274 1271 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 DHX34Q14147 1143 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 LRRC14Q15048 493 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 RHOT2Q8IXI1 618 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 NACC1Q96RE7 527 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 CSRNP1Q96S65 589 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 CNOT10Q9H9A5 744 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 ACTR5Q9H9F9 607 aaPredicted RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 MLXIPLQ9NP71 852 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 INTS9Q9NV88 658 aaKnown RBP12.14□□□□□ -0.47
CUX1-218ENST00000560541 CD2APQ9Y5K6 639 aa12.14□□□□□ -0.47
CUX1-218ENST00000560541 ATP8B3O60423 1300 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SYNGAP1Q96PV0 1343 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 MYH11P35749 1972 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 FAM187AA6NFU0 413 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 CCDC169A6NNP5 214 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SPOPO43791 374 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SMNDC1O75940 238 aaKnown RBP eCLIP12.13□□□□□ -0.47
CUX1-218ENST00000560541 NUDT17P0C025 328 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 POLR2MP0CAP2 368 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SLC8A1P32418 973 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 PPP2R5CQ13362 524 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 CEP55Q53EZ4 464 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 STXBP4Q6ZWJ1 553 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SLC47A2Q86VL8 602 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 PPM1KQ8N3J5 372 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 ATL2Q8NHH9 583 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 ATXN2LQ8WWM7 1075 aaKnown RBP12.13□□□□□ -0.47
CUX1-218ENST00000560541 CCT6BQ92526 530 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SLC5A5Q92911 643 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 ELAC2Q9BQ52 826 aaKnown RBP12.13□□□□□ -0.47
CUX1-218ENST00000560541 DIS3Q9Y2L1 958 aaKnown RBP12.13□□□□□ -0.47
CUX1-218ENST00000560541 LTBP1Q14766 1721 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 CYP26A1O43174 497 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 LINGO3P0C6S8 592 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 ZNF131P52739 623 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 GPC5P78333 572 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 PLCB4Q15147 1175 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 SEL1L2Q5TEA6 688 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 PHLDB2Q86SQ0 1253 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 NOP9Q86U38 636 aaKnown RBP12.13□□□□□ -0.47
CUX1-218ENST00000560541 CCDC197Q8NCU1 140 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 ZNF317Q96PQ6 595 aaPredicted RBP12.13□□□□□ -0.47
CUX1-218ENST00000560541 DDX23Q9BUQ8 820 aaKnown RBP12.13□□□□□ -0.47
CUX1-218ENST00000560541 BATF3Q9NR55 127 aa12.13□□□□□ -0.47
CUX1-218ENST00000560541 KLRG2A4D1S0 409 aaPredicted RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 RNF8O76064 485 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 ACSL3O95573 720 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 DLATP10515 647 aaKnown RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 CHRNA3P32297 505 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 VAMP7P51809 220 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 DRP2Q13474 957 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 LONRF1Q17RB8 773 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 FAM133BQ5BKY9 247 aaKnown RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 PADI6Q6TGC4 694 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 TAX1BP1Q86VP1 789 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 PLEKHO2Q8TD55 490 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 CCDC127Q96BQ5 260 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 FAM84AQ96KN4 292 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 IPO5O00410 1097 aaKnown RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 TRIM37O94972 964 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 MMP13P45452 471 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 TRIP13Q15645 432 aaPredicted RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 C1orf54Q8WWF1 131 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 FBXO28Q9NVF7 368 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 SEL1LQ9UBV2 794 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 MTRF1LQ9UGC7 380 aaKnown RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 LY75O60449 1722 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 PIK3CDO00329 1044 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 AHCYL1O43865 530 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 ANP32DO95626 131 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 RARAP10276 462 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 CREB1P16220 341 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 PPP1R7Q15435 360 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 ZRSR2Q15696 482 aaKnown RBP12.12□□□□□ -0.47
CUX1-218ENST00000560541 PPP2R5EQ16537 467 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 NFIL3Q16649 462 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 EPS8L1Q8TE68 723 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 PGM2Q96G03 612 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 NUP85Q9BW27 656 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 IDI2Q9BXS1 227 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 NOD2Q9HC29 1040 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 GPRC5CQ9NQ84 441 aa12.12□□□□□ -0.47
CUX1-218ENST00000560541 RASGRF2O14827 1237 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 HGSO14964 777 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 CLDN3O15551 220 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 RIPK2O43353 540 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 FESP07332 822 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms