RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PTPROQ16827 1216 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 BMT2Q1RMZ1 405 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 KCNT2Q6UVM3 1135 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 EPM2AIP1Q7L775 607 aaPredicted RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 SPRED2Q7Z698 418 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 ZBTB33Q86T24 672 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 ACAP3Q96P50 834 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 FAM193BQ96PV7 902 aaPredicted RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 CERS4Q9HA82 394 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 LZTS1Q9Y250 596 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 STXBP5LQ9Y2K9 1186 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 SZT2Q5T011 3432 aa14.21□□□□□ -0.14
NEDD8-208ENST00000560427 NLRC5Q86WI3 1866 aa14.21□□□□□ -0.14
NEDD8-208ENST00000560427 EPOPA6NHQ4 379 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 OGTO15294 1046 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 NR1I2O75469 434 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 RHOBTB3O94955 611 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 CLTAP09496 248 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 FOSL2P15408 326 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 CASP1P29466 404 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 MATR3P43243 847 aaKnown RBP eCLIP14.2□□□□□ -0.14
NEDD8-208ENST00000560427 SCNN1GP51170 649 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 PLCB3Q01970 1234 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 DSC1Q08554 894 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 GPM6BQ13491 265 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 HSP90AA2PQ14568 343 aaPredicted RBP14.2□□□□□ -0.14
NEDD8-208ENST00000560427 KCNB1Q14721 858 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 TPRNQ4KMQ1 711 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 XKR4Q5GH76 650 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 THNSL1Q8IYQ7 743 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 SYCP3Q8IZU3 236 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 GSTCDQ8NEC7 633 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 ZNF507Q8TCN5 953 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 GDPD5Q8WTR4 605 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 MYLIPQ8WY64 445 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 ZBTB45Q96K62 511 aaPredicted RBP14.2□□□□□ -0.14
NEDD8-208ENST00000560427 SNX27Q96L92 541 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 ZFP42Q96MM3 310 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 TSPAN18Q96SJ8 248 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 FGFBP2Q9BYJ0 223 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 GTPBP4Q9BZE4 634 aaKnown RBP14.2□□□□□ -0.14
NEDD8-208ENST00000560427 NRDE2Q9H7Z3 1164 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 PLEKHA5Q9HAU0 1116 aa14.2□□□□□ -0.14
NEDD8-208ENST00000560427 LAMA2P24043 3122 aaKnown RBP14.2□□□□□ -0.14
NEDD8-208ENST00000560427 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.19□□□□□ -0.14
NEDD8-208ENST00000560427 FAM189A1O60320 539 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 LPXNO60711 386 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 ZC3H11AO75152 810 aaKnown RBP eCLIP14.19□□□□□ -0.14
NEDD8-208ENST00000560427 FGF18O76093 207 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 KIF20AO95235 890 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 POMCP01189 267 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 RPN1P04843 607 aaKnown RBP14.19□□□□□ -0.14
NEDD8-208ENST00000560427 THP07101 528 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 HARSP12081 509 aaKnown RBP14.19□□□□□ -0.14
NEDD8-208ENST00000560427 GARTP22102 1010 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 BCAR1P56945 870 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 KMT5BQ4FZB7 885 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 SLC39A4Q6P5W5 647 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 CD302Q8IX05 232 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 SLC39A11Q8N1S5 342 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 CEP120Q8N960 986 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 KLHL23Q8NBE8 558 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 POMGNT1Q8WZA1 660 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 MRPL38Q96DV4 380 aaKnown RBP14.19□□□□□ -0.14
NEDD8-208ENST00000560427 MSTO1Q9BUK6 570 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 GBP3Q9H0R5 595 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 SLC38A7Q9NVC3 462 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 RMND1Q9NWS8 449 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 SPG21Q9NZD8 308 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 CNTN3Q9P232 1028 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 CGNQ9P2M7 1197 aaKnown RBP14.19□□□□□ -0.14
NEDD8-208ENST00000560427 HCSTQ9UBK5 93 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 PLAGL2Q9UPG8 496 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 GDAQ9Y2T3 454 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 KIAA1671Q9BY89 1806 aa14.19□□□□□ -0.14
NEDD8-208ENST00000560427 CDH23Q9H251 3354 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 PTGESO14684 152 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 GADD45BO75293 160 aaPredicted RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 PRPF6O94906 941 aaKnown RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 SMC2O95347 1197 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 LDHAP00338 332 aaKnown RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 ITGB1P05556 798 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 GALTP07902 379 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 PRR29P0C7W0 189 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 KCNE1P15382 129 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 AFF1P51825 1210 aaKnown RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 KRT17Q04695 432 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 KCNA1Q09470 495 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 TUSC3Q13454 348 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 ADGRE1Q14246 886 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 TIGD5Q53EQ6 642 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 PDE12Q6L8Q7 609 aaKnown RBP14.18□□□□□ -0.14
NEDD8-208ENST00000560427 ALKAL1Q6UXT8 129 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 HS2ST1Q7LGA3 356 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 ZNF280BQ86YH2 543 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 COLGALT2Q8IYK4 626 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 GOLGA5Q8TBA6 731 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 SCFD1Q8WVM8 642 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 HPS3Q969F9 1004 aa14.18□□□□□ -0.14
NEDD8-208ENST00000560427 TMEM169Q96HH4 297 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms