RNA–Protein interactions for RNA: ENST00000560297.5

USP8-209, Transcript of ubiquitin specific peptidase 8, human

TSL 5

Gene USP8, Length 652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP8-209	ENST00000560297	ZBED2	Q9BTP6	218 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	NXF3	Q9H4D5	531 aa	Known RBP	13.37	□□□□□ -0.27
USP8-209	ENST00000560297	PCIF1	Q9H4Z3	704 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	RPF1	Q9H9Y2	349 aa	Known RBP	13.37	□□□□□ -0.27
USP8-209	ENST00000560297	PLEKHA5	Q9HAU0	1116 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	DMAC2	Q9NW81	257 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	SNTG2	Q9NY99	539 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	HSPBP1	Q9NZL4	362 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	KANSL3	Q9P2N6	904 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	PARP2	Q9UGN5	583 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	RWDD2A	Q9UIY3	292 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	HES2	Q9Y543	173 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	INSL6	Q9Y581	213 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	PDE4DIP	Q5VU43	2346 aa		13.37	□□□□□ -0.27
USP8-209	ENST00000560297	LTBP2	Q14767	1821 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	ZNF233	A6NK53	670 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	RBAK-RBAKDN	I3L0D1	243 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	FAM189A1	O60320	539 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	OFD1	O75665	1012 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	DGKI	O75912	1065 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	GJB5	O95377	273 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	NR3C1	P04150	777 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	IBSP	P21815	317 aa	Predicted RBP	13.36	□□□□□ -0.27
USP8-209	ENST00000560297	OSTN	P61366	133 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	TYRO3	Q06418	890 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	ADAM9	Q13443	819 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	DPCR1	Q3MIW9	517 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	ZSCAN23	Q3MJ62	389 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	ANKRD40	Q6AI12	368 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	AGMO	Q6ZNB7	445 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	HERC6	Q8IVU3	1022 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	CD302	Q8IX05	232 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	FBXL18	Q96ME1	805 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	RAD9A	Q99638	391 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	FAM213A	Q9BRX8	229 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	APOL6	Q9BWW8	343 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	TMEM117	Q9H0C3	514 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	RSAD1	Q9HA92	442 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	CPSF3	Q9UKF6	684 aa	Known RBP	13.36	□□□□□ -0.27
USP8-209	ENST00000560297	FRMD4B	Q9Y2L6	1034 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	SI	P14410	1827 aa		13.36	□□□□□ -0.27
USP8-209	ENST00000560297	CEP290	O15078	2479 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	CETN3	O15182	167 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	INPPL1	O15357	1258 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	EXOC3	O60645	756 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	RECQL4	O94761	1208 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	FGFR1OP	O95684	399 aa	Known RBP	13.35	□□□□□ -0.27
USP8-209	ENST00000560297	ADRB2	P07550	413 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	FGFR1	P11362	822 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	NR2F2	P24468	414 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	AKAP5	P24588	427 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	ACOT2	P49753	483 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	CYP2J2	P51589	502 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	XKR4	Q5GH76	650 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	NOMO2	Q5JPE7	1267 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	TTI2	Q6NXR4	508 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	ALKAL1	Q6UXT8	129 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	CEP120	Q8N960	986 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	URGCP	Q8TCY9	931 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	LPP	Q93052	612 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	ZNF689	Q96CS4	500 aa	Predicted RBP	13.35	□□□□□ -0.27
USP8-209	ENST00000560297	SAAL1	Q96ER3	474 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	YME1L1	Q96TA2	773 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	NAT10	Q9H0A0	1025 aa	Known RBP	13.35	□□□□□ -0.27
USP8-209	ENST00000560297	ASB7	Q9H672	318 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	CTNND2	Q9UQB3	1225 aa		13.35	□□□□□ -0.27
USP8-209	ENST00000560297	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.35	□□□□□ -0.27
USP8-209	ENST00000560297	TTC26	A0AVF1	554 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	SYCE3	A1L190	88 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	GOLGA8IP	A6NC78	632 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	ARL5C	A6NH57	179 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	GOLGA8J	A6NMD2	632 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	MAPK13	O15264	365 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	TLL1	O43897	1013 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	IL18RAP	O95256	599 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	PSMC2	P35998	433 aa	Known RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	PMS1	P54277	932 aa	Known RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	HTRA4	P83105	476 aa	Predicted RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	SURF1	Q15526	300 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	ENOX2	Q16206	610 aa	Known RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	SNRNP35	Q16560	246 aa	Known RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	SLC10A6	Q3KNW5	377 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	SEZ6	Q53EL9	994 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	CLLU1OS	Q5K130	101 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	FAM117B	Q6P1L5	589 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	CRELD2	Q6UXH1	353 aa	Predicted RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	FILIP1	Q7Z7B0	1213 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	TMEM192	Q8IY95	271 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	CMTR2	Q8IYT2	770 aa	Known RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	CEP63	Q96MT8	703 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	CASD1	Q96PB1	797 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	RPS6KC1	Q96S38	1066 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	GAD1	Q99259	594 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	ANP32E	Q9BTT0	268 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	MKNK1	Q9BUB5	465 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	MRPL9	Q9BYD2	267 aa	Known RBP	13.34	□□□□□ -0.27
USP8-209	ENST00000560297	RNF19A	Q9NV58	838 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	TTC3	P53804	2025 aa		13.34	□□□□□ -0.27
USP8-209	ENST00000560297	CARNS1	A5YM72	827 aa		13.33	□□□□□ -0.28
USP8-209	ENST00000560297	TBKBP1	A7MCY6	615 aa		13.33	□□□□□ -0.28

Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms