RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 KIAA0895Q8NCT3 520 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 RNF214Q8ND24 703 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 KLHDC9Q8NEP7 349 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 LMBR1Q8WVP7 490 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 ZNF333Q96JL9 665 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 PRIMPOLQ96LW4 560 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 MDFIQ99750 246 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 C7orf25Q9BPX7 421 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 MCOLN1Q9GZU1 580 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 FAM49AQ9H0Q0 323 aaPredicted RBP5.77□□□□□ -1.49
SPG11-220ENST00000559933 POLR3FQ9H1D9 316 aaPredicted RBP5.77□□□□□ -1.49
SPG11-220ENST00000559933 SMARCAD1Q9H4L7 1026 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 TUT1Q9H6E5 874 aaKnown RBP5.77□□□□□ -1.49
SPG11-220ENST00000559933 SUGCTQ9HAC7 445 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 ATP6V0A4Q9HBG4 840 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 SLC39A2Q9NP94 309 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 PAK6Q9NQU5 681 aaPredicted RBP5.77□□□□□ -1.49
SPG11-220ENST00000559933 EXOC1Q9NV70 894 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 PANK4Q9NVE7 773 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 DNAJB12Q9NXW2 375 aaKnown RBP5.77□□□□□ -1.49
SPG11-220ENST00000559933 ERAP1Q9NZ08 941 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 HDAC6Q9UBN7 1215 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 TUBE1Q9UJT0 475 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 DBR1Q9UK59 544 aaKnown RBP5.77□□□□□ -1.49
SPG11-220ENST00000559933 SLC6A14Q9UN76 642 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 LOXHD1Q8IVV2 1947 aa5.77□□□□□ -1.49
SPG11-220ENST00000559933 MYH11P35749 1972 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 TRIP12Q14669 1992 aaPredicted RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 SIP14410 1827 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 A0A1W2PQ45 241 aaPredicted RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 A0A1W2PQY0 241 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 TRIM49BA6NDI0 452 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 TISP43B9A030 160 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 K7ENM7 598 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 HAS3O00219 553 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 SLC16A4O15374 487 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 TREHO43280 583 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 PRMT3O60678 531 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 PPFIA4O75335 1185 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 TBCAO75347 108 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 CSDE1O75534 798 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 FAM13AO94988 1023 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 EDN1P05305 212 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 FGFR4P22455 802 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 KLRC1P26715 233 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 SARSP49591 514 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 ACLYP53396 1101 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 STX17P56962 302 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 EHHADHQ08426 723 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 KCNA1Q09470 495 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 STK4Q13043 487 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 CAPSQ13938 189 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 MORC3Q14149 939 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 ELOAQ14241 798 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 HSP90AA4PQ58FG1 418 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 FAM47CQ5HY64 1035 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 NT5DC1Q5TFE4 455 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 GDF6Q6KF10 455 aaPredicted RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 MTHFD1LQ6UB35 978 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 LRSAM1Q6UWE0 723 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 UNC13DQ70J99 1090 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 NELFCDQ8IXH7 590 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 MYCT1Q8N699 235 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 METTL13Q8N6R0 699 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 SPATA20Q8TB22 786 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 DHX38Q92620 1227 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 SYAP1Q96A49 352 aaPredicted RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 IFT43Q96FT9 208 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 MYO19Q96H55 970 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 MED15Q96RN5 788 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 CTAGE1Q96RT6 745 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 FIZ1Q96SL8 496 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 PYM1Q9BRP8 204 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 MTG1Q9BT17 334 aaPredicted RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 OSBPL7Q9BZF2 842 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 CUEDC2Q9H467 287 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 DHX33Q9H6R0 707 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 MAGEF1Q9HAY2 307 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 C11orf16Q9NQ32 467 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 PDLIM7Q9NR12 457 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 ANKEF1Q9NU02 776 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 TRMT13Q9NUP7 481 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 USP25Q9UHP3 1055 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 DMGDHQ9UI17 866 aaKnown RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 ZNF215Q9UL58 517 aaPredicted RBP5.76□□□□□ -1.49
SPG11-220ENST00000559933 CTNND2Q9UQB3 1225 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 Q9Y3F1 56 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 STARD13Q9Y3M8 1113 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 PCDHA2Q9Y5H9 948 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 ZMYM2Q9UBW7 1377 aa5.76□□□□□ -1.49
SPG11-220ENST00000559933 EVPLQ92817 2033 aa5.75□□□□□ -1.49
SPG11-220ENST00000559933 FRMD3A2A2Y4 597 aa5.75□□□□□ -1.49
SPG11-220ENST00000559933 C17orf102A2RUQ5 167 aa5.75□□□□□ -1.49
SPG11-220ENST00000559933 SLC26A4O43511 780 aa5.75□□□□□ -1.49
SPG11-220ENST00000559933 HBP1O60381 514 aa5.75□□□□□ -1.49
SPG11-220ENST00000559933 ADAM23O75077 832 aa5.75□□□□□ -1.49
SPG11-220ENST00000559933 MAFO75444 373 aaPredicted RBP5.75□□□□□ -1.49
SPG11-220ENST00000559933 RGS9O75916 674 aaPredicted RBP5.75□□□□□ -1.49
SPG11-220ENST00000559933 PRPF6O94906 941 aaKnown RBP5.75□□□□□ -1.49
SPG11-220ENST00000559933 RHOBTB3O94955 611 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms