RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 AGMOQ6ZNB7 445 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 USP37Q86T82 979 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 SMYD4Q8IYR2 804 aaPredicted RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 CRIPAKQ8N1N5 446 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 GPD1LQ8N335 351 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 FIBCD1Q8N539 461 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 SP7Q8TDD2 431 aaPredicted RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 LPPQ93052 612 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 DHTKD1Q96HY7 919 aaPredicted RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 ZBTB45Q96K62 511 aaPredicted RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 SAMD11Q96NU1 681 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 FAM193BQ96PV7 902 aaPredicted RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 TSPAN18Q96SJ8 248 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 PBX4Q9BYU1 374 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 RPF1Q9H9Y2 349 aaKnown RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 PLEKHA5Q9HAU0 1116 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 RC3H2Q9HBD1 1191 aaKnown RBP10.98□□□□□ -0.65
USP3-216ENST00000559873 HSPBP1Q9NZL4 362 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 TRAF3IP3Q9Y228 551 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 HES2Q9Y543 173 aa10.98□□□□□ -0.65
USP3-216ENST00000559873 ARL5CA6NH57 179 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 TISP43B9A030 160 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 INPPL1O15357 1258 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 EXTL3O43909 919 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 EXOC3O60645 756 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 IL18RAPO95256 599 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 CA3P07451 260 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 LAG3P18627 525 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 AKAP5P24588 427 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 DNAJB2P25686 324 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 PAK1Q13153 545 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 SURF1Q15526 300 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 NFIL3Q16649 462 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 EDRF1Q3B7T1 1238 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 PAN2Q504Q3 1202 aaKnown RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 CLLU1OSQ5K130 101 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 SPOUT1Q5T280 376 aaKnown RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 PPP2R2DQ66LE6 453 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 RBM43Q6ZSC3 357 aaKnown RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 TMCO2Q7Z6W1 182 aaPredicted RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 ADSSL1Q8N142 457 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 CEP120Q8N960 986 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 MLKLQ8NB16 471 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 XXYLT1Q8NBI6 393 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 NOC3LQ8WTT2 800 aaKnown RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 TIFAQ96CG3 184 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 ZNF689Q96CS4 500 aaPredicted RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 SNX27Q96L92 541 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 GAD1Q99259 594 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 CBWD1Q9BRT8 395 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 KCTD10Q9H3F6 313 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 SLC28A3Q9HAS3 691 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 SLC38A7Q9NVC3 462 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 CPSF3Q9UKF6 684 aaKnown RBP10.97□□□□□ -0.65
USP3-216ENST00000559873 MAPK8IP1Q9UQF2 711 aa10.97□□□□□ -0.65
USP3-216ENST00000559873 PTPRSQ13332 1948 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 ZNF233A6NK53 670 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 GRXCR1A8MXD5 290 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 TGFB1I1O43294 461 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 OFD1O75665 1012 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 NR3C1P04150 777 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 CXCL8P10145 99 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 CCNE1P24864 410 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 ADSSP30520 456 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 HOXD13P35453 343 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 PPM1AP35813 382 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 PRCPP42785 496 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 SCNN1GP51170 649 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 CYP2J2P51589 502 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 RABGGTBP53611 331 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 STX1AQ16623 288 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 CT47A1Q5JQC4 288 aaPredicted RBP10.96□□□□□ -0.65
USP3-216ENST00000559873 ISM2Q6H9L7 571 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 FAM109BQ6ICB4 259 aaPredicted RBP10.96□□□□□ -0.65
USP3-216ENST00000559873 FOXR2Q6PJQ5 311 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 NT5DC4Q86YG4 428 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 SLC9A9Q8IVB4 645 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 BRSK2Q8IWQ3 736 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 TMEM174Q8WUU8 243 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 P2RX5Q93086 422 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 SAAL1Q96ER3 474 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 CASD1Q96PB1 797 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 FAM213AQ9BRX8 229 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 RNF39Q9H2S5 420 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 PCIF1Q9H4Z3 704 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 RNF19AQ9NV58 838 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 TBC1D13Q9NVG8 400 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 ANO10Q9NW15 660 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 RBAKQ9NYW8 714 aaPredicted RBP10.96□□□□□ -0.65
USP3-216ENST00000559873 CNTN3Q9P232 1028 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 FRMD4BQ9Y2L6 1034 aa10.96□□□□□ -0.65
USP3-216ENST00000559873 LAMA3Q16787 3333 aa10.96□□□□□ -0.66
USP3-216ENST00000559873 MEIS3P2A8K0S8 358 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 CETN3O15182 167 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 CLIC2O15247 247 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 FAM189A1O60320 539 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 FGFR1OPO95684 399 aaKnown RBP10.95□□□□□ -0.66
USP3-216ENST00000559873 POMCP01189 267 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 THP07101 528 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 KCNE1P15382 129 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms