RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 NRSN2Q9GZP1 204 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 JMJD4Q9H9V9 463 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 VAT1LQ9HCJ6 419 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 CRTAC1Q9NQ79 661 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 MAN1C1Q9NR34 630 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 MTMR10Q9NXD2 777 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 HOXC10Q9NYD6 342 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 AKT3Q9Y243 479 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 MRPL11Q9Y3B7 192 aaKnown RBP5.74□□□□□ -1.49
LDLR-209ENST00000558528 MRFAP1Q9Y605 127 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 MYH7P12883 1935 aa5.74□□□□□ -1.49
LDLR-209ENST00000558528 A0A1W2PQ27 194 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 A0A1W2PQ64 194 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 A0A1W2PQD8 194 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 TRIM75PA6NK02 468 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 DCDC2CA8MYV0 355 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 BTBD18B2RXH4 712 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 SPTLC2O15270 562 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 CTAGE5O15320 804 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 CYTH3O43739 400 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 ZNF862O60290 1169 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 MAN1A2O60476 641 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 DLX3O60479 287 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 USP2O75604 605 aaPredicted RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 PRKD3O94806 890 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 TBC1D8O95759 1140 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 GOLGA8HP0CJ92 632 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 COL6A1P12109 1028 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 GRIA2P42262 883 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 ADCY7P51828 1080 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 OAZ1P54368 228 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 GJA9P57773 515 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 SLC39A14Q15043 492 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 GPR158Q5T848 1215 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 TDRD10Q5VZ19 366 aaKnown RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 ANO1Q5XXA6 986 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 TOGARAM2Q6ZUX3 1019 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 KCTD1Q719H9 257 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 FASTKD5Q7L8L6 764 aaKnown RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 ERO1BQ86YB8 467 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 CPA6Q8N4T0 437 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 ARHGEF39Q8N4T4 335 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 DEFB123Q8N688 67 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 C2orf69Q8N8R5 385 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 MYRIPQ8NFW9 859 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.73□□□□□ -1.49
LDLR-209ENST00000558528 FERMT2Q96AC1 680 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 SCLYQ96I15 445 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 FUBP3Q96I24 572 aaKnown RBP eCLIP5.73□□□□□ -1.49
LDLR-209ENST00000558528 FGD4Q96M96 766 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 PIGSQ96S52 555 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 ZFYVE21Q9BQ24 234 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 LPIN3Q9BQK8 851 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 HERPUD2Q9BSE4 406 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 PSTPIP2Q9H939 334 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 LMBRD1Q9NUN5 540 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 PRR13Q9NZ81 148 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 VPS54Q9P1Q0 977 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 TJP2Q9UDY2 1190 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 PUF60Q9UHX1 559 aaKnown RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 HOOK1Q9UJC3 728 aaKnown RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 FBXO9Q9UK97 447 aaPredicted RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 ZKSCAN5Q9Y2L8 839 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 PCDHA1Q9Y5I3 950 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 ZHX2Q9Y6X8 837 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 FRMPD2Q68DX3 1309 aaPredicted RBP5.73□□□□□ -1.49
LDLR-209ENST00000558528 MYPNQ86TC9 1320 aa5.73□□□□□ -1.49
LDLR-209ENST00000558528 A0A1W2PRG0 241 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 SLC35F4A4IF30 521 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 ADARB2-AS1A8MUL3 147 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 C9IYK1 514 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 STXBP3O00186 592 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 FIBPO43427 364 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 CUTAO60888 179 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 FKTNO75072 461 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 UBOX5O94941 541 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 FKBP9O95302 570 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 SCG5P05408 212 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 MYL3P08590 195 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 MYBL2P10244 700 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 PF4V1P10720 104 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 GCFC2P16383 781 aaKnown RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 CD247P20963 164 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 COPB2P35606 906 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 ME1P48163 572 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 USP11P51784 963 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 GFRA1P56159 465 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 SESN3P58005 492 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 SPP2Q13103 211 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 KLF1Q13351 362 aaPredicted RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 COG2Q14746 738 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 NONOQ15233 471 aaKnown RBP eCLIP5.72□□□□□ -1.49
LDLR-209ENST00000558528 CDC37Q16543 378 aaPredicted RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 FOXD4L6Q3SYB3 417 aaPredicted RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 ATP13A4Q4VNC1 1196 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 ZBTB37Q5TC79 503 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 ARL6IP4Q66PJ3 421 aaKnown RBP5.72□□□□□ -1.49
LDLR-209ENST00000558528 IL31Q6EBC2 164 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 OTUD7BQ6GQQ9 843 aa5.72□□□□□ -1.49
LDLR-209ENST00000558528 FOXD4L3Q6VB84 417 aaPredicted RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms