RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	KIAA0319L	Q8IZA0	1049 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZNF710	Q8N1W2	664 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	TRPV1	Q8NER1	839 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	LMBR1	Q8WVP7	490 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	NLRP7	Q8WX94	980 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	JAKMIP2	Q96AA8	810 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	SCLT1	Q96NL6	688 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	CGRRF1	Q99675	332 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	FDXACB1	Q9BRP7	624 aa	Predicted RBP	13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	PTPRH	Q9HD43	1115 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	DNAI1	Q9UI46	699 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	CNTNAP2	Q9UHC6	1331 aa		13.51	□□□□□ -0.25
SHMT2-233	ENST00000557529	TULP1	O00294	542 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	ABLIM1	O14639	778 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	SEPT4	O43236	478 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	GFPT2	O94808	682 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	VTN	P04004	478 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	GNAT1	P11488	350 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	HARS	P12081	509 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	TNNI1	P19237	187 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	MFAP3	P55082	362 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	NKX3-2	P78367	333 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	BEX3	Q00994	111 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	POU5F1	Q01860	360 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	KIF5A	Q12840	1032 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	PCBP1	Q15365	356 aa	Known RBP eCLIP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	KYAT1	Q16773	422 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZNF568	Q3ZCX4	644 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	PHLDB3	Q6NSJ2	640 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZBTB33	Q86T24	672 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	NT5C1B	Q96P26	610 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	POP1	Q99575	1024 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	IFIH1	Q9BYX4	1025 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	UPF3A	Q9H1J1	476 aa	Known RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	PDE11A	Q9HCR9	933 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	UBE2T	Q9NPD8	197 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	RAB20	Q9NX57	234 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	PCDHA13	Q9Y5I0	950 aa		13.5	□□□□□ -0.25
SHMT2-233	ENST00000557529	TTLL13P	A6NNM8	815 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	FAM189A1	O60320	539 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	C6orf222	P0C671	652 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	RARB	P10826	455 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	MCF2	P10911	925 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	CYP2C9	P11712	490 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	CASQ1	P31415	396 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	MAGEA1	P43355	309 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	CHMP4BP1	P59074	171 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	PURA	Q00577	322 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	CYP27A1	Q02318	531 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	PTK2	Q05397	1052 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	SLC18A3	Q16572	532 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	AMHR2	Q16671	573 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZACN	Q401N2	412 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZBTB41	Q5SVQ8	909 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	CCDC122	Q5T0U0	273 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	C10orf76	Q5T2E6	689 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	ENOSF1	Q7L5Y1	443 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	TAS1R2	Q8TE23	839 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZNF668	Q96K58	619 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	MTG1	Q9BT17	334 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	GCOM2	Q9BZD3	368 aa	Predicted RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	MINDY3	Q9H8M7	445 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	CPSF3	Q9UKF6	684 aa	Known RBP	13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZSWIM8	A7E2V4	1837 aa		13.49	□□□□□ -0.25
SHMT2-233	ENST00000557529	C17orf102	A2RUQ5	167 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZNF263	O14978	683 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	B4GALT5	O43286	388 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ERLIN2	O94905	339 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	IL18RAP	O95256	599 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	GNRH1	P01148	92 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	C4BPA	P04003	597 aa	Known RBP	13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ADAM17	P78536	824 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	NCBP1	Q09161	790 aa	Known RBP	13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ENOX2	Q16206	610 aa	Known RBP	13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	WDR44	Q5JSH3	913 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	WDR49	Q8IV35	697 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ARHGEF19	Q8IW93	802 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	C7orf31	Q8N865	590 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ZNF516	Q92618	1163 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	SEMA4D	Q92854	862 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	GPR88	Q9GZN0	384 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	FAM49A	Q9H0Q0	323 aa	Predicted RBP	13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	ADAMTS10	Q9H324	1103 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	RNF186	Q9NXI6	227 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	SRRD	Q9UH36	339 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	EVPL	Q92817	2033 aa		13.48	□□□□□ -0.25
SHMT2-233	ENST00000557529	CASP8AP2	Q9UKL3	1982 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	ATP8B3	O60423	1300 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529		A0A0U1RQJ8	604 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	PJA2	O43164	708 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	EVI5	O60447	810 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	TRPA1	O75762	1119 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	CLTA	P09496	248 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	IQCF3	P0C7M6	154 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	HOXC8	P31273	242 aa		13.47	□□□□□ -0.25
SHMT2-233	ENST00000557529	GCNT1	Q02742	428 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms