RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 LIMCH1Q9UPQ0 1083 aa6.1□□□□□ -1.43
SCFD1-221ENST00000556534 LUC7L2Q9Y383 392 aaKnown RBP6.1□□□□□ -1.43
SCFD1-221ENST00000556534 MFAP3LO75121 409 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 ABLIM3O94929 683 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 CCND1P24385 295 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 PCSK1P29120 753 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 PIN1Q13526 163 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 C3orf36Q3SXR2 165 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 FAM47AQ5JRC9 791 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 METTL24Q5JXM2 366 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 NAIF1Q69YI7 327 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 FAM83AQ86UY5 434 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 ZGPATQ8N5A5 531 aaKnown RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 ATXN2LQ8WWM7 1075 aaKnown RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 C7orf25Q9BPX7 421 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 CPPED1Q9BRF8 314 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 TCF7L1Q9HCS4 588 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 AASDHPPTQ9NRN7 309 aa6.09□□□□□ -1.43
SCFD1-221ENST00000556534 AJAP1Q9UKB5 411 aaPredicted RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 THRAP3Q9Y2W1 955 aaKnown RBP6.09□□□□□ -1.43
SCFD1-221ENST00000556534 CCDC154A6NI56 674 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 CXorf49A8MYA2 514 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-221ENST00000556534 AMY1AP04745 511 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 HK1P19367 917 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 FPR1P21462 350 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 ALDH1A3P47895 512 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 MAN2A2P49641 1150 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 PER3P56645 1201 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 ATP8B2P98198 1209 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 MTM1Q13496 603 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 RRP1BQ14684 758 aaKnown RBP6.08□□□□□ -1.44
SCFD1-221ENST00000556534 ODR4Q5SWX8 454 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 RNF207Q6ZRF8 634 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 MIGA2Q7L4E1 593 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 IL17DQ8TAD2 202 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 SLC35B2Q8TB61 432 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 CASKIN2Q8WXE0 1202 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 GPR87Q9BY21 358 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 KRTAP9-3Q9BYQ3 159 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 SENP6Q9GZR1 1112 aaPredicted RBP6.08□□□□□ -1.44
SCFD1-221ENST00000556534 MANSC1Q9H8J5 431 aa6.08□□□□□ -1.44
SCFD1-221ENST00000556534 GRXCR1A8MXD5 290 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 GPR32O75388 356 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 TARDBPQ13148 414 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCFD1-221ENST00000556534 CRHR2Q13324 411 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 UAP1L1Q3KQV9 507 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 AFMIDQ63HM1 303 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 RHOT1Q8IXI2 618 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 RAVER1Q8IY67 606 aaKnown RBP6.07□□□□□ -1.44
SCFD1-221ENST00000556534 RAB24Q969Q5 203 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 HDAC10Q969S8 669 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 PGBD4Q96DM1 585 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 MNTQ99583 582 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 GPR20Q99678 358 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 RTFDC1Q9BY42 306 aaPredicted RBP6.07□□□□□ -1.44
SCFD1-221ENST00000556534 RHOBTB2Q9BYZ6 727 aa6.07□□□□□ -1.44
SCFD1-221ENST00000556534 PRR5-ARHGAP8B1AHC4 643 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 PLSCR1O15162 318 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 PJA2O43164 708 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 AKAP10O43572 662 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 HSP90B1P14625 803 aaKnown RBP6.06□□□□□ -1.44
SCFD1-221ENST00000556534 IL2RBP14784 551 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 EPHB1P54762 984 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 IL10RAQ13651 578 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 VPS72Q15906 364 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 BMT2Q1RMZ1 405 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 USP39Q53GS9 565 aaKnown RBP6.06□□□□□ -1.44
SCFD1-221ENST00000556534 SPRED1Q7Z699 444 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 TMPRSS6Q8IU80 811 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 RNF169Q8NCN4 708 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 CCHCR1Q8TD31 782 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 SH3RF3Q8TEJ3 882 aaPredicted RBP6.06□□□□□ -1.44
SCFD1-221ENST00000556534 EXTL1Q92935 676 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 KAT5Q92993 513 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 CYFIP2Q96F07 1278 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 CSRNP2Q9H175 543 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 TMEM140Q9NV12 185 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 AURKAIP1Q9NWT8 199 aaPredicted RBP6.06□□□□□ -1.44
SCFD1-221ENST00000556534 MOCS1Q9NZB8 636 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 IP6K2Q9UHH9 426 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 HDAC5Q9UQL6 1122 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 PCDHA13Q9Y5I0 950 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 ACTL7AQ9Y615 435 aa6.06□□□□□ -1.44
SCFD1-221ENST00000556534 TBKBP1A7MCY6 615 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 GOLGA6L6A8MZA4 724 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 SGTAO43765 313 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 S100BP04271 92 aaPredicted RBP6.05□□□□□ -1.44
SCFD1-221ENST00000556534 SNRPA1P09661 255 aaKnown RBP6.05□□□□□ -1.44
SCFD1-221ENST00000556534 RAB27AP51159 221 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 CDC42EP1Q00587 391 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 CNGB1Q14028 1251 aaPredicted RBP6.05□□□□□ -1.44
SCFD1-221ENST00000556534 TOB2Q14106 344 aaPredicted RBP6.05□□□□□ -1.44
SCFD1-221ENST00000556534 OTUD7BQ6GQQ9 843 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 DRICH1Q6PGQ1 229 aaPredicted RBP6.05□□□□□ -1.44
SCFD1-221ENST00000556534 SYT12Q8IV01 421 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 GSPT2Q8IYD1 628 aaKnown RBP6.05□□□□□ -1.44
SCFD1-221ENST00000556534 MIER2Q8N344 545 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 OR10H5Q8NGA6 315 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 STON2Q8WXE9 905 aa6.05□□□□□ -1.44
SCFD1-221ENST00000556534 HSPBAP1Q96EW2 488 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms