RNA–Protein interactions for RNA: ENST00000556517.1

ABCD4-225, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 947 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-225	ENST00000556517	UBN1	Q9NPG3	1134 aa		13.63	□□□□□ -0.23
ABCD4-225	ENST00000556517	RBAK	Q9NYW8	714 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-225	ENST00000556517	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.63	□□□□□ -0.23
ABCD4-225	ENST00000556517	PARP2	Q9UGN5	583 aa		13.63	□□□□□ -0.23
ABCD4-225	ENST00000556517	LTBP2	Q14767	1821 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	GOLGA8IP	A6NC78	632 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	GOLGA8J	A6NMD2	632 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517		C9IYK1	514 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	ZNF623	O75123	536 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	KRT13	P13646	458 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	PPP2R3A	Q06190	1150 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	CCDC40	Q4G0X9	1142 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	NPAS4	Q8IUM7	802 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	FAM186B	Q8IYM0	893 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	ANKRD20A12P	Q8NF67	263 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	FAM200A	Q8TCP9	573 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	LINC01599	Q8WXQ3	324 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	EEF2KMT	Q96G04	330 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	RPS6KC1	Q96S38	1066 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	MKNK1	Q9BUB5	465 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	SRRT	Q9BXP5	876 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	HAPLN2	Q9GZV7	340 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	ELAC1	Q9H777	363 aa	Known RBP	13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	TMEM161A	Q9NX61	479 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	NFE2L3	Q9Y4A8	694 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517	HES2	Q9Y543	173 aa		13.62	□□□□□ -0.23
ABCD4-225	ENST00000556517		H0YGN5	161 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	IKBKB	O14920	756 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	MAPK13	O15264	365 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	RECQL4	O94761	1208 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	IL18RAP	O95256	599 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	WDR5	P61964	334 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	POU5F1	Q01860	360 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	SURF1	Q15526	300 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	SEZ6	Q53EL9	994 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	GLB1L	Q6UWU2	654 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	INTS8	Q75QN2	995 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	CREBRF	Q8IUR6	639 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	CEP120	Q8N960	986 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	RDH13	Q8NBN7	331 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	SMG8	Q8ND04	991 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	URGCP	Q8TCY9	931 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	RSPH1	Q8WYR4	309 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	FAM212A	Q96EL1	285 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	DUSP9	Q99956	384 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.61	□□□□□ -0.23	2e-8	■□□□□ 10.9
ABCD4-225	ENST00000556517	UBE2O	Q9C0C9	1292 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	THAP9	Q9H5L6	903 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	RSAD1	Q9HA92	442 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	PLEKHA5	Q9HAU0	1116 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	METTL14	Q9HCE5	456 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	DMAC2	Q9NW81	257 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	SNTG2	Q9NY99	539 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	PCDH10	Q9P2E7	1040 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	ARMCX3	Q9UH62	379 aa	Predicted RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	CPSF3	Q9UKF6	684 aa	Known RBP	13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	GIT1	Q9Y2X7	761 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	SLC4A7	Q9Y6M7	1214 aa		13.61	□□□□□ -0.23
ABCD4-225	ENST00000556517	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	FAM189A1	O60320	539 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	AKAP3	O75969	853 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	TPM2	P07951	284 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	CXCL8	P10145	99 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	AKAP5	P24588	427 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	TNFSF9	P41273	254 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	EPHB4	P54760	987 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	FAM189B	P81408	668 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	TCTN1	Q2MV58	587 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	TMEM240	Q5SV17	173 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	LRRC55	Q6ZSA7	311 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	C16orf59	Q7L2K0	433 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	FILIP1	Q7Z7B0	1213 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	MRPL10	Q7Z7H8	261 aa	Known RBP	13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	CBWD2	Q8IUF1	395 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	CD302	Q8IX05	232 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	ZC3H3	Q8IXZ2	948 aa	Known RBP	13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	HERVK_113	Q902F9	699 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	RNPC3	Q96LT9	517 aa	Known RBP	13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	FBXL18	Q96ME1	805 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	FNBP1	Q96RU3	617 aa		13.6	□□□□□ -0.23
ABCD4-225	ENST00000556517	SCN5A	Q14524	2016 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	STX10	O60499	249 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	UPP2	O95045	317 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	CDK11B	P21127	795 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	MLH1	P40692	756 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	CASP4	P49662	377 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	SPAG1	Q07617	926 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	ENOX2	Q16206	610 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	ZBTB41	Q5SVQ8	909 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	BRSK2	Q8IWQ3	736 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	LPP	Q93052	612 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	CCDC127	Q96BQ5	260 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	VWCE	Q96DN2	955 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	SNX27	Q96L92	541 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	CNOT6L	Q96LI5	555 aa	Known RBP	13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	TSPAN18	Q96SJ8	248 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	SLC9A7	Q96T83	725 aa		13.59	□□□□□ -0.23
ABCD4-225	ENST00000556517	ZBED2	Q9BTP6	218 aa		13.59	□□□□□ -0.23

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