RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 CCPG1Q9ULG6 757 aa5.47□□□□□ -1.53
TMEM260-210ENST00000556422 CAPN6Q9Y6Q1 641 aa5.47□□□□□ -1.53
TMEM260-210ENST00000556422 A0A087WUV0 522 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 FZD9O00144 591 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ZMYND10O75800 440 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 KRT18P05783 430 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CASP4P49662 377 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GMPSP49915 693 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 VAV2P52735 878 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 TAGLNQ01995 201 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MAPK7Q13164 816 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ITGB3BPQ13352 177 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GPR162Q16538 588 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CCDC40Q4G0X9 1142 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CCDC122Q5T0U0 273 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 NBPF12Q5TAG4 269 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GKAP1Q5VSY0 366 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RRAGAQ7L523 313 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 TPH2Q8IWU9 490 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MICALL2Q8IY33 904 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RAVER1Q8IY67 606 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 SPIRE2Q8WWL2 714 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 LPAR1Q92633 364 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 HOOK2Q96ED9 719 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 PCMTD1Q96MG8 357 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 EPAS1Q99814 870 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MXRA8Q9BRK3 442 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ZNF577Q9BSK1 485 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 WDR11Q9BZH6 1224 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 KCNH7Q9NS40 1196 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 HACL1Q9UJ83 578 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CROTQ9UKG9 612 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 FZD1Q9UP38 647 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 SSUH2Q9Y2M2 353 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MYH9P35579 1960 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GTPBP10A4D1E9 387 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 PDXKO00764 312 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GAS7O60861 476 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 BCRP11274 1271 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 NMT1P30419 496 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CYLC1P35663 651 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ATP6V1E1P36543 226 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 EIF4A3P38919 411 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CHMP4BP1P59074 171 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 AP2B1P63010 937 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 KRT83P78385 493 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 KCNH2Q12809 1159 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MTMR2Q13614 643 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ZC2HC1CQ53FD0 456 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 PAPD7Q5XG87 772 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 NEK5Q6P3R8 708 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 LRRC31Q6UY01 552 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CEP57Q86XR8 500 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 BRSK2Q8IWQ3 736 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 LILRB2Q8N423 598 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GPR161Q8N6U8 529 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RABGGTAQ92696 567 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 TBC1D20Q96BZ9 403 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 LXNQ9BS40 222 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CEP72Q9P209 647 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 TSKSQ9UJT2 592 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 LTBP3Q9NS15 1303 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 A0A0G2JMZ2 1700 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GOLGA6L7A0A1B0GV03 622 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RBAK-RBAKDNI3L0D1 243 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CTNND1O60716 968 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 KATNA1O75449 491 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 PPP1R37O75864 691 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 GNA14O95837 355 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RPS12P25398 132 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 DNAJA1P31689 397 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 BLVRAP53004 296 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 FBXW10Q5XX13 1052 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 CCBE1Q6UXH8 406 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 KSR1Q8IVT5 923 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 NOA1Q8NC60 698 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 APPL2Q8NEU8 664 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 SYTL5Q8TDW5 730 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 SLC35C1Q96A29 364 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 NR1H4Q96RI1 486 aaPredicted RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 PNKPQ96T60 521 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 STRA6Q9BX79 667 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 EDEM3Q9BZQ6 932 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MTFR1LQ9H019 292 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RAVER2Q9HCJ3 691 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 NLRC4Q9NPP4 1024 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ST7Q9NRC1 585 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 HOMER3Q9NSC5 361 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 TYW1Q9NV66 732 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 DDX56Q9NY93 547 aaKnown RBP5.46□□□□□ -1.54
TMEM260-210ENST00000556422 MTUS1Q9ULD2 1270 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 SATB2Q9UPW6 733 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 RIPK3Q9Y572 518 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 ZNF541Q9H0D2 1346 aa5.46□□□□□ -1.54
TMEM260-210ENST00000556422 TRIM64A6NGJ6 449 aa5.45□□□□□ -1.54
TMEM260-210ENST00000556422 TRIM64BA6NI03 449 aa5.45□□□□□ -1.54
TMEM260-210ENST00000556422 XPOTO43592 962 aaKnown RBP5.45□□□□□ -1.54
TMEM260-210ENST00000556422 PFDN1O60925 122 aa5.45□□□□□ -1.54
TMEM260-210ENST00000556422 SASH3O75995 380 aa5.45□□□□□ -1.54
TMEM260-210ENST00000556422 SEC31AO94979 1220 aaKnown RBP5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms