RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 KCNN1Q92952 543 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 FIZ1Q96SL8 496 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 UHRF1Q96T88 793 aaPredicted RBP15.05■□□□□ -0
SHMT2-219ENST00000555563 ZBP1Q9H171 429 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 NGRNQ9NPE2 291 aaKnown RBP15.05■□□□□ -0
SHMT2-219ENST00000555563 MARCH5Q9NX47 278 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 ANKFY1Q9P2R3 1169 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 PCDHA7Q9UN72 937 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 FAN1Q9Y2M0 1017 aa15.05■□□□□ -0
SHMT2-219ENST00000555563 BRWD1Q9NSI6 2320 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 HIDE1A8MVS5 230 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 F8W810 466 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 PER2O15055 1255 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 NCK2O43639 380 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 TOM1L1O75674 476 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 MCF2P10911 925 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 LTBRP36941 435 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 GRM5P41594 1212 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 OR1G1P47890 313 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 DLX2Q07687 328 aaPredicted RBP15.04■□□□□ -0
SHMT2-219ENST00000555563 SMC1AQ14683 1233 aaKnown RBP15.04■□□□□ -0
SHMT2-219ENST00000555563 E2F4Q16254 413 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 LEXMQ3ZCV2 418 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 ZPBP2Q6X784 338 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 TMC7Q7Z402 723 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 SFR1Q86XK3 245 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 FAM178BQ8IXR5 827 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 VPS52Q8N1B4 723 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 EFHBQ8N7U6 833 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 DNAJC19Q96DA6 116 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 ZBTB45Q96K62 511 aaPredicted RBP15.04■□□□□ -0
SHMT2-219ENST00000555563 TCHPQ9BT92 498 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 CCDC94Q9BW85 323 aaPredicted RBP15.04■□□□□ -0
SHMT2-219ENST00000555563 TLE6Q9H808 572 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 CACNG4Q9UBN1 327 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 TBX20Q9UMR3 447 aa15.04■□□□□ -0
SHMT2-219ENST00000555563 TTC28Q96AY4 2481 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 C2orf71A6NGG8 1288 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 GLP2RO95838 553 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 ALDH2P05091 517 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 BMP1P13497 986 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 NMT1P30419 496 aaKnown RBP15.03■□□□□ -0
SHMT2-219ENST00000555563 CA8P35219 290 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 OSTNP61366 133 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 RBM10P98175 930 aaKnown RBP15.03■□□□□ -0
SHMT2-219ENST00000555563 NOLC1Q14978 699 aaKnown RBP eCLIP15.03■□□□□ -0
SHMT2-219ENST00000555563 DUSP6Q16828 381 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 GLRA4Q5JXX5 417 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 VN1R2Q8NFZ6 395 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 AUTS2Q8WXX7 1259 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 RABGGTAQ92696 567 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 DHX58Q96C10 678 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 BICD1Q96G01 975 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 RCOR1Q9UKL0 485 aa15.03■□□□□ -0
SHMT2-219ENST00000555563 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 CASTOR2A6NHX0 329 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 HNRNPDLO14979 420 aaKnown RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 THP07101 528 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 CTSAP10619 480 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 SCP2P22307 547 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 NDUFV1P49821 464 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 LIG4P49917 911 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 YARSP54577 528 aaKnown RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 KRT85P78386 507 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 MCL1Q07820 350 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 ADAM15Q13444 863 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 TUSC3Q13454 348 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 NAB2Q15742 525 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 ZC2HC1CQ53FD0 456 aaPredicted RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 RESP18Q5W5W9 173 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 MRPL43Q8N983 215 aaKnown RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 LEO1Q8WVC0 666 aaPredicted RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 STAMQ92783 540 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 SNX27Q96L92 541 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 CDCA3Q99618 268 aaPredicted RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 PAAF1Q9BRP4 392 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 HAPLN2Q9GZV7 340 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 TNMDQ9H2S6 317 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 CUEDC2Q9H467 287 aa15.02■□□□□ -0
SHMT2-219ENST00000555563 BARX2Q9UMQ3 279 aaPredicted RBP15.02■□□□□ -0
SHMT2-219ENST00000555563 FSD2A1L4K1 749 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 FRMD3A2A2Y4 597 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 CLDN3O15551 220 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 MEFVO15553 781 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 NR1I2O75469 434 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 EFEMP2O95967 443 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 PIGRP01833 764 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 IDEP14735 1019 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 GAP43P17677 238 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 MATR3P43243 847 aaKnown RBP eCLIP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 GTF2BQ00403 316 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 BMS1Q14692 1282 aaKnown RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 PTPN14Q15678 1187 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 CLUL1Q15846 466 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 SEZ6Q53EL9 994 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 MAP4K3Q8IVH8 894 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 RNF168Q8IYW5 571 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 IQUBQ8NA54 791 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 SPATA32Q96LK8 384 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms