RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 MRFAP1L1Q96HT8 127 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 MSTO1Q9BUK6 570 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 NXF3Q9H4D5 531 aaKnown RBP11.73□□□□□ -0.53
TDP1-211ENST00000555178 TOPORSQ9NS56 1045 aaPredicted RBP11.73□□□□□ -0.53
TDP1-211ENST00000555178 KCNG1Q9UIX4 513 aa11.73□□□□□ -0.53
TDP1-211ENST00000555178 AGO2Q9UKV8 859 aaKnown RBP11.73□□□□□ -0.53
TDP1-211ENST00000555178 PITPNM1O00562 1244 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 CLDN3O15551 220 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 FGFR1OPO95684 399 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 ACRP10323 421 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 EPB41P11171 864 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 EPHB4P54760 987 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 MARSP56192 900 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 MCL1Q07820 350 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 SNRNP35Q16560 246 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 LMBRD2Q68DH5 695 aaPredicted RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 ANP32BQ92688 251 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 LPPQ93052 612 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 IFIH1Q9BYX4 1025 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 MMRN2Q9H8L6 949 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 ARMCX3Q9UH62 379 aaPredicted RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 FRMD4BQ9Y2L6 1034 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 TTC3P53804 2025 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 RALGAPA2Q2PPJ7 1873 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 TDRD15B5MCY1 1934 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 LGALS16A8MUM7 142 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 KIAA0355O15063 1070 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 SLC16A3O15427 465 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 SFPQP23246 707 aaKnown RBP eCLIP11.72□□□□□ -0.53
TDP1-211ENST00000555178 AKAP5P24588 427 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 PSMC2P35998 433 aaKnown RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 CDC42EP1Q00587 391 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 GOLGA8FQ08AF8 430 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 GOLGA8DPQ0D2H9 430 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 PAK2Q13177 524 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 BFSP2Q13515 415 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 NOLC1Q14978 699 aaKnown RBP eCLIP11.72□□□□□ -0.53
TDP1-211ENST00000555178 MAN2A1Q16706 1144 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 TCERG1LQ5VWI1 586 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 C16orf59Q7L2K0 433 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 TMCO2Q7Z6W1 182 aaPredicted RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 PRIMPOLQ96LW4 560 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 ADAM2Q99965 735 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 APOL6Q9BWW8 343 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 SEZ6LQ9BYH1 1024 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 SNTG2Q9NY99 539 aa11.72□□□□□ -0.53
TDP1-211ENST00000555178 ZMYND8Q9ULU4 1186 aaPredicted RBP11.72□□□□□ -0.53
TDP1-211ENST00000555178 TIMP1P01033 207 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 ATF7P17544 494 aaPredicted RBP11.71□□□□□ -0.53
TDP1-211ENST00000555178 GARTP22102 1010 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 APBA1Q02410 837 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 UBXN1Q04323 297 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 ENOX2Q16206 610 aaKnown RBP11.71□□□□□ -0.53
TDP1-211ENST00000555178 VWA3BQ502W6 1294 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 PLEKHG4Q58EX7 1191 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 TMC6Q7Z403 805 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 FRMD5Q7Z6J6 570 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 DRC7Q8IY82 874 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 ANKRD20A12PQ8NF67 263 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 SLC35C1Q96A29 364 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 FBXL18Q96ME1 805 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 NDST4Q9H3R1 872 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 KLK14Q9P0G3 267 aa11.71□□□□□ -0.53
TDP1-211ENST00000555178 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.71□□□□□ -0.53
TDP1-211ENST00000555178 SCN1AP35498 2009 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 CAND2O75155 1236 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 GNA14O95837 355 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 CXCL8P10145 99 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 ABCD1P33897 745 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 PBX1P40424 430 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 CCDC173Q0VFZ6 552 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 ARID5BQ14865 1188 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 TWF2Q6IBS0 349 aaKnown RBP11.71□□□□□ -0.54
TDP1-211ENST00000555178 VSTM4Q8IW00 320 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 GPD1LQ8N335 351 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 TMEM174Q8WUU8 243 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 ZNF516Q92618 1163 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 BADQ92934 168 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 CCDC127Q96BQ5 260 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 PPP1R9BQ96SB3 815 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 PDE11AQ9HCR9 933 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 CGNQ9P2M7 1197 aaKnown RBP11.71□□□□□ -0.54
TDP1-211ENST00000555178 CPSF3Q9UKF6 684 aaKnown RBP11.71□□□□□ -0.54
TDP1-211ENST00000555178 IPPQ9Y573 584 aa11.71□□□□□ -0.54
TDP1-211ENST00000555178 FNDC1Q4ZHG4 1894 aaPredicted RBP11.71□□□□□ -0.54
TDP1-211ENST00000555178 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.7□□□□□ -0.54
TDP1-211ENST00000555178 OGTO15294 1046 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 CBFA2T2O43439 604 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 STAG3L1P0CL83 205 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 SCP2P22307 547 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 IGFBP6P24592 240 aaPredicted RBP11.7□□□□□ -0.54
TDP1-211ENST00000555178 SNRPFP62306 86 aaKnown RBP11.7□□□□□ -0.54
TDP1-211ENST00000555178 KCNH2Q12809 1159 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 BFSP1Q12934 665 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 MYBPC2Q14324 1141 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 SLC10A6Q3KNW5 377 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 NOTUMQ6P988 496 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 SLC27A1Q6PCB7 646 aa11.7□□□□□ -0.54
TDP1-211ENST00000555178 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.7□□□□□ -0.54
TDP1-211ENST00000555178 CRACR2AQ9BSW2 395 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms