RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 BTBD19C9JJ37 291 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 KIF1CO43896 1103 aaKnown RBP12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CYP24A1Q07973 514 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CETN1Q12798 172 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 STRN3Q13033 797 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CAPSQ13938 189 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 GPR20Q99678 358 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 FBXL5Q9UKA1 691 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 FAM169AQ9Y6X4 670 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 ZNFX1Q9P2E3 1918 aaKnown RBP12.6□□□□□ -0.39
SHMT2-212ENST00000554467 ANO9A1A5B4 782 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CYP26A1O43174 497 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 SGPL1O95470 568 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CCT5P48643 541 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 GALCP54803 685 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 MYBPC2Q14324 1141 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 SV2AQ7L0J3 742 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CNPY4Q8N129 248 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 TRPC6Q9Y210 931 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 BZW2Q9Y6E2 419 aaKnown RBP12.6□□□□□ -0.39
SHMT2-212ENST00000554467 PTPRJQ12913 1337 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 DNAJC25-GNG10A0A024R161 153 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 IGKV6D-21A0A0A0MT36 114 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 IQCA1LA6NCM1 817 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 CELF3Q5SZQ8 465 aaKnown RBP12.6□□□□□ -0.39
SHMT2-212ENST00000554467 SPOPLQ6IQ16 392 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 VPS36Q86VN1 386 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 GPD1LQ8N335 351 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 BRI3BPQ8WY22 251 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 ZNF516Q92618 1163 aa12.6□□□□□ -0.39
SHMT2-212ENST00000554467 SHOX2O60902 331 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 H2AFZP0C0S5 128 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 TNNI1P19237 187 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 ADORA2AP29274 412 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 ARL2P36404 184 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 FAM160B1Q5W0V3 765 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 H2AFVQ71UI9 128 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 SLC47A2Q86VL8 602 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 METTL13Q8N6R0 699 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 AFAP1L1Q8TED9 768 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 HDAC7Q8WUI4 952 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 C17orf75Q9HAS0 396 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 RRAGCQ9HB90 399 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 NRBP2Q9NSY0 501 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 ATMINO43313 823 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 TNFAIP3P21580 790 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 SSTR3P32745 418 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 AARSP49588 968 aaKnown RBP eCLIP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 SLC7A5Q01650 507 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 MKRN4PQ13434 485 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 TUBB2AQ13885 445 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 BRDTQ58F21 947 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 CCDC181Q5TID7 509 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 KRT39Q6A163 491 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 ARMCX2Q7L311 632 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 ARHGEF26Q96DR7 871 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 JPH2Q9BR39 696 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 TUBB2BQ9BVA1 445 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 AGO2Q9UKV8 859 aaKnown RBP12.59□□□□□ -0.39
SHMT2-212ENST00000554467 TMEM130Q8N3G9 435 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 MS4A4AQ96JQ5 239 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 TCHPQ9BT92 498 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 MSTO1Q9BUK6 570 aa12.59□□□□□ -0.39
SHMT2-212ENST00000554467 CELF2O95319 508 aaKnown RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 CLCN3P51790 818 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 OSTNP61366 133 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 SATB1Q01826 763 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 TARBP2Q15633 366 aaKnown RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 RHPN2Q8IUC4 686 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 RPUSD2Q8IZ73 545 aaKnown RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 RNF10Q8N5U6 811 aaKnown RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 RNF149Q8NC42 400 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 SLC17A8Q8NDX2 589 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 GPRC5AQ8NFJ5 357 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 NLRP4Q96MN2 994 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 NIFKQ9BYG3 293 aaKnown RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 THAP2Q9H0W7 228 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 RNPEPQ9H4A4 650 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 ZNF233A6NK53 670 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 ZBTB42B2RXF5 422 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 TGFB3P10600 412 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 KRT5P13647 590 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 TNFSF9P41273 254 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 BIRC3Q13489 604 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 PNMA8AQ86V59 439 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 SLC30A5Q8TAD4 765 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 MFSD14AQ96MC6 490 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 RAB20Q9NX57 234 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 HTTP42858 3142 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 AGPSO00116 658 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 KCNK3O14649 394 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 ZNF286BP0CG31 522 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 PLCB4Q15147 1175 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 CCDC62Q6P9F0 684 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 PHLDB2Q86SQ0 1253 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 NOP9Q86U38 636 aaKnown RBP12.58□□□□□ -0.4
SHMT2-212ENST00000554467 FBXL13Q8NEE6 735 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 AGPAT1Q99943 283 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 MROH8Q9H579 483 aa12.58□□□□□ -0.4
SHMT2-212ENST00000554467 TMEM8AQ9HCN3 771 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms