RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 FAM193BQ96PV7 902 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 ADPGKQ9BRR6 497 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 MRPL4Q9BYD3 311 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 KANSL3Q9P2N6 904 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 STK17AQ9UEE5 414 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 CCDC39Q9UFE4 941 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 ODF2LQ9ULJ1 636 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 BARX2Q9UMQ3 279 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 PCDHA7Q9UN72 937 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 FAN1Q9Y2M0 1017 aa12.72□□□□□ -0.37
CCDC88C-208ENST00000554165 TRIP11Q15643 1979 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 C2orf71A6NGG8 1288 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 CUTAO60888 179 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 PPP6R2O75170 966 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 CXCL14O95715 111 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 ALDH2P05091 517 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 CA8P35219 290 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 TXLNAP40222 546 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 STAT6P42226 847 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 SMTNP53814 917 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 DUSP6Q16828 381 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 DCAF4L1Q3SXM0 396 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 LEXMQ3ZCV2 418 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 GLRA4Q5JXX5 417 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 LLGL2Q6P1M3 1020 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 DDX53Q86TM3 631 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 SFR1Q86XK3 245 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 EFHBQ8N7U6 833 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 MRPL43Q8N983 215 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 FEZF2Q8TBJ5 459 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 B3GALT6Q96L58 329 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 TCHPQ9BT92 498 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 ZBP1Q9H171 429 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 PARVGQ9HBI0 331 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 TBC1D7Q9P0N9 293 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 CLEC1BQ9P126 229 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 LARSQ9P2J5 1176 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 ANKFY1Q9P2R3 1169 aa12.71□□□□□ -0.37
CCDC88C-208ENST00000554165 TDRD15B5MCY1 1934 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 CASTOR2A6NHX0 329 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 TISP43B9A030 160 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 K7ENM7 598 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 TRAK2O60296 914 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 TBCAO75347 108 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 IL9P15248 144 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 GRM5P41594 1212 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 ME1P48163 572 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 NDUFV1P49821 464 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 STRN3Q13033 797 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 NAB2Q15742 525 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 E2F4Q16254 413 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 TPRNQ4KMQ1 711 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 ZBTB41Q5SVQ8 909 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 SLC39A4Q6P5W5 647 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 MPZL3Q6UWV2 235 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 CCDC73Q6ZRK6 1079 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 SV2BQ7L1I2 683 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 HACE1Q8IYU2 909 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 HASPINQ8TF76 798 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 RSPH1Q8WYR4 309 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 DHX58Q96C10 678 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 ZMAT2Q96NC0 199 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 RPS6KC1Q96S38 1066 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 TMEM175Q9BSA9 504 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 FGFBP2Q9BYJ0 223 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 GPR62Q9BZJ7 368 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 RCOR1Q9UKL0 485 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 TBX20Q9UMR3 447 aa12.7□□□□□ -0.38
CCDC88C-208ENST00000554165 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 GRXCR2A6NFK2 248 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 ANKRD63C9JTQ0 380 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 C2CD2LO14523 706 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 CLASP2O75122 1294 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 CTSAP10619 480 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 MCF2P10911 925 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 CASP1P29466 404 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 SOX4Q06945 474 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 KCNA1Q09470 495 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 GRIK3Q13003 919 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 SMC1AQ14683 1233 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 AAK1Q2M2I8 961 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 PTCRAQ6ISU1 281 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 KANK3Q6NY19 840 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 ALKAL1Q6UXT8 129 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 FAM178BQ8IXR5 827 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 HPS3Q969F9 1004 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 BICD1Q96G01 975 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 MSLNLQ96KJ4 702 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 PPP1R10Q96QC0 940 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 APOL5Q9BWW9 433 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 GOLGA2P5Q9HBQ8 144 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 NGRNQ9NPE2 291 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 CD320Q9NPF0 282 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 CDH22Q9UJ99 828 aa12.69□□□□□ -0.38
CCDC88C-208ENST00000554165 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 SMIM28A0A1B0GU29 152 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 TOM1L1O75674 476 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 KIF4AO95239 1232 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 EFEMP2O95967 443 aa12.68□□□□□ -0.38
CCDC88C-208ENST00000554165 THP07101 528 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms